##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933657.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 90196 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.02990154774048 33.0 31.0 34.0 30.0 34.0 2 32.21333540290035 34.0 31.0 34.0 30.0 34.0 3 32.32280810678966 34.0 31.0 34.0 30.0 34.0 4 35.84925052108741 37.0 35.0 37.0 35.0 37.0 5 35.905661004922614 37.0 35.0 37.0 35.0 37.0 6 35.87292119384452 37.0 35.0 37.0 35.0 37.0 7 35.873386846423344 37.0 35.0 37.0 35.0 37.0 8 35.71234866291188 37.0 35.0 37.0 35.0 37.0 9 37.56004700873653 39.0 37.0 39.0 35.0 39.0 10 37.1974699543217 39.0 37.0 39.0 34.0 39.0 11 37.18958712138011 39.0 37.0 39.0 34.0 39.0 12 37.19555190917557 39.0 37.0 39.0 34.0 39.0 13 37.19735908466007 39.0 37.0 39.0 34.0 39.0 14 38.39588230076722 40.0 38.0 41.0 34.0 41.0 15 38.420129495764776 40.0 38.0 41.0 34.0 41.0 16 38.474355847265954 40.0 38.0 41.0 34.0 41.0 17 38.453778438068206 40.0 38.0 41.0 34.0 41.0 18 38.17822298106346 39.0 38.0 41.0 34.0 41.0 19 37.88245598474433 39.0 37.0 41.0 34.0 41.0 20 37.44039646990998 39.0 35.0 41.0 34.0 41.0 21 37.36425118630538 39.0 35.0 40.0 33.0 41.0 22 37.31122222714976 39.0 35.0 40.0 33.0 41.0 23 37.19871169453191 39.0 35.0 40.0 33.0 41.0 24 37.08371768149364 39.0 35.0 40.0 33.0 41.0 25 36.988225641935344 38.0 35.0 40.0 33.0 41.0 26 36.94638343163777 38.0 35.0 40.0 33.0 41.0 27 36.83742072819194 38.0 35.0 40.0 33.0 41.0 28 36.76603175307109 38.0 35.0 40.0 33.0 41.0 29 36.594516386535986 38.0 35.0 40.0 32.0 41.0 30 36.37213401924697 38.0 35.0 40.0 31.0 41.0 31 36.02862654663178 38.0 35.0 40.0 30.0 41.0 32 35.74085325291587 38.0 35.0 40.0 29.0 41.0 33 35.28043372211628 38.0 35.0 40.0 24.0 41.0 34 34.884130116634886 38.0 35.0 40.0 21.0 41.0 35 34.64488447381259 38.0 35.0 40.0 20.0 41.0 36 34.39312164619274 38.0 34.0 40.0 18.0 41.0 37 34.17598341389862 38.0 34.0 40.0 18.0 41.0 38 34.05325069847887 38.0 34.0 40.0 17.0 41.0 39 34.08795290256774 38.0 34.0 40.0 17.0 41.0 40 33.91521796975476 38.0 34.0 40.0 15.0 41.0 41 33.84494877821633 38.0 33.0 40.0 15.0 41.0 42 33.65109317486363 38.0 33.0 40.0 15.0 41.0 43 33.4929486895206 38.0 33.0 40.0 15.0 41.0 44 33.330690939731255 37.0 33.0 40.0 13.0 41.0 45 33.30084482682159 37.0 33.0 40.0 12.0 41.0 46 33.120814670273624 37.0 33.0 40.0 12.0 41.0 47 33.04883808594616 37.0 33.0 40.0 12.0 41.0 48 32.97737150206218 37.0 32.0 40.0 12.0 41.0 49 32.96951084305291 37.0 32.0 40.0 11.0 41.0 50 32.82822963324316 37.0 32.0 40.0 10.0 41.0 51 31.983679985808685 35.0 30.0 39.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 3.0 12 4.0 13 7.0 14 8.0 15 8.0 16 5.0 17 20.0 18 46.0 19 89.0 20 113.0 21 205.0 22 337.0 23 505.0 24 837.0 25 1376.0 26 2105.0 27 2630.0 28 2518.0 29 2347.0 30 2237.0 31 2384.0 32 2644.0 33 3254.0 34 4955.0 35 6849.0 36 8536.0 37 10351.0 38 17635.0 39 18179.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.462237793250253 5.5656570136147945 39.27557763093707 31.69652756219788 2 36.417357754224135 5.213091489644774 40.622644019690455 17.74690673644064 3 19.36782118940973 5.266308927225154 57.14000620870105 18.225863674664065 4 15.35101334870726 5.668765798926781 57.4338108120094 21.546410040356555 5 12.894141647079692 6.91050600913566 57.820745931083415 22.37460641270123 6 17.343341168122755 7.7775067630493595 61.54707525832631 13.332076810501576 7 63.1812940706905 3.2628941416470796 28.48241607166615 5.073395715996274 8 62.17238014989578 3.86713379750765 27.834937247771517 6.125548804825048 9 57.03024524369151 5.636613597055302 30.48693955386048 6.8462016053927 10 28.32054636569249 19.50197347997694 36.12909663399707 16.048383520333495 11 19.139429686460595 18.364450751696307 40.92531819592887 21.57080136591423 12 17.627167501884784 15.05166526231762 47.42338906381658 19.89777817198102 13 19.993126080979202 16.29784025899153 48.29925939066034 15.409774269368931 14 17.787928511242185 18.23695064082664 46.53310568096146 17.44201516696971 15 13.931881679897112 17.716971927801676 48.119650538826555 20.231495853474655 16 14.608186615814448 16.645970996496516 46.284757638919686 22.46108474876935 17 14.369816843318993 17.423167324493324 44.0629296199388 24.14408621224888 18 15.274513282185461 16.7834493769125 46.58299702869307 21.35904031220897 19 15.659231008026964 19.06958179963635 46.53643177081024 18.734755421526454 20 16.706949310390705 20.880083373985542 44.514169142755776 17.898798172867977 21 16.60827531154375 21.712714532795246 44.45651691871036 17.22249323695064 22 14.050512217836712 20.814670273626326 42.715863231185416 22.418954277351546 23 14.47403432524724 21.115127056632225 41.04949221694975 23.361346401170785 24 15.904252960219967 20.67940928644286 40.98851390305557 22.42782385028161 25 14.664730143243604 22.0142800124174 39.77892589471817 23.542063949620825 26 13.880881635549247 22.793693733646727 41.760166747971084 21.56525788283294 27 15.948600824870281 21.96327996806954 42.760211095835736 19.327908111224446 28 13.931881679897112 19.9509956095614 43.8256685440596 22.291454166481884 29 16.67147101867045 18.661581444853432 42.110514878708585 22.556432657767527 30 20.480952592132688 19.915517317841147 39.619273581977026 19.984256508049135 31 19.4265821100714 24.69510843052907 36.66903188611468 19.209277573284847 32 18.42210297574172 23.13738968468668 36.86748858042485 21.57301875914675 33 21.964388664685796 20.180495809126793 34.216594970952144 23.638520555235264 34 19.486451727349326 20.529735243248037 36.48277085458335 23.501042174819283 35 20.168300146347953 20.302452436915164 37.109184442769084 22.420062973967802 36 23.644064038316557 21.847975519978714 36.078096589649206 18.429863852055522 37 23.680651026653067 22.34134551421349 36.78322763758925 17.19477582154419 38 23.39571599627478 21.856845092908777 34.76983458246485 19.97760432835159 39 23.77378154241873 20.550800478956937 32.24200629739678 23.433411681227547 40 20.46543083950508 22.92895472083019 34.5447691693645 22.060845270300238 41 19.73147367954233 23.57089006164353 35.54037873076412 21.157257528050025 42 23.5875205108874 20.606235309769836 37.16351057696572 18.642733602377046 43 24.7971085192248 18.3777551110914 37.4273803716351 19.397755998048694 44 22.289236773249367 18.671559714399752 35.21553062220054 23.823672890150338 45 22.942259080225288 18.542950906913834 33.772007627832714 24.74278238502816 46 23.297041997427822 20.123952281697637 36.814271142844476 19.76473457803007 47 19.143864472925628 23.15845492039558 39.26559936139075 18.43208124528804 48 19.296864605969223 21.080757461528226 39.88203468003015 19.740343252472393 49 22.841367688145816 17.979733025854806 38.72122932280811 20.45766996319127 50 21.38897512084793 17.170384495986518 36.38187946250388 25.058760920661673 51 19.54410395139474 17.069493103907046 34.47935606900528 28.907046875692938 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 380.0 1 677.0 2 974.0 3 3690.0 4 6406.0 5 4059.5 6 1713.0 7 1572.0 8 1431.0 9 1382.5 10 1334.0 11 1298.5 12 1263.0 13 1170.5 14 1078.0 15 986.5 16 895.0 17 861.5 18 828.0 19 758.0 20 688.0 21 653.0 22 618.0 23 599.5 24 581.0 25 601.5 26 626.5 27 631.0 28 608.5 29 586.0 30 671.5 31 757.0 32 832.0 33 907.0 34 1013.0 35 1119.0 36 1209.0 37 1299.0 38 1532.5 39 1766.0 40 2115.5 41 2465.0 42 3077.5 43 3690.0 44 4145.5 45 4601.0 46 5723.0 47 6845.0 48 8576.0 49 10307.0 50 10371.5 51 10436.0 52 8669.5 53 6903.0 54 5466.0 55 4029.0 56 3558.0 57 3087.0 58 2808.5 59 2530.0 60 2446.5 61 2363.0 62 2156.0 63 1949.0 64 1791.0 65 1633.0 66 1383.0 67 1133.0 68 963.5 69 794.0 70 695.0 71 596.0 72 517.0 73 438.0 74 327.5 75 176.0 76 135.0 77 111.5 78 88.0 79 67.0 80 46.0 81 34.0 82 22.0 83 14.0 84 6.0 85 6.0 86 6.0 87 3.5 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 90196.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.794403299481125 #Duplication Level Percentage of deduplicated Percentage of total 1 79.7115050399722 50.851479001286094 2 11.993395898505387 15.302230697591913 3 4.304831421619743 8.238724555412656 4 1.7431352102884952 4.448090824426804 5 0.7160236357316649 2.28391502949133 6 0.413625304136253 1.58321876801632 7 0.23635731664928744 1.0554791786775466 8 0.18074383037886688 0.9224355847265954 9 0.10775112964893988 0.6186527118719234 >10 0.5474452554744526 6.225331500288261 >50 0.026068821689259645 1.143066211361923 >100 0.013903371567605143 1.944653864916404 >500 0.0034758428919012857 1.2140227948024302 >1k 0.0017379214459506429 4.1686992771298055 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3760 4.1686992771298055 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCC 550 0.60978313894186 No Hit CCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC 545 0.6042396558605703 RNA PCR Primer, Index 3 (95% over 23bp) CTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGCT 408 0.45234821943323433 TruSeq Adapter, Index 3 (95% over 24bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGC 268 0.2971306931571245 No Hit TCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC 232 0.2572176149718391 RNA PCR Primer, Index 24 (95% over 23bp) TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 215 0.23836977249545435 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 196 0.21730453678655373 No Hit GCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTGC 183 0.2028914807752007 RNA PCR Primer, Index 24 (95% over 23bp) CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 140 0.1552175262761098 No Hit TCCTGTCTCTTATACACATCTGACGCTGTGCATGTCGTATGCCGTCTTCTG 112 0.12417402102088784 TruSeq Adapter, Index 3 (95% over 22bp) TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 98 0.10865226839327687 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.47452215175839285 0.0 2 0.0 0.0 0.0 1.6231318462016053 0.0 3 0.0011086966162579272 0.0 0.0 2.183023637411859 0.0 4 0.0011086966162579272 0.0 0.0 2.95245908909486 0.0 5 0.0011086966162579272 0.0 0.0 4.65874318151581 0.0 6 0.0011086966162579272 0.0 0.0 6.0180052330480285 0.0 7 0.0011086966162579272 0.0 0.0 7.258636746640649 0.0 8 0.0011086966162579272 0.0 0.0 9.07689919730365 0.0 9 0.0011086966162579272 0.0 0.0 9.861856401614263 0.0 10 0.0011086966162579272 0.0 0.0 11.912945141691427 0.0 11 0.0011086966162579272 0.0 0.0 16.7413189054947 0.0 12 0.0011086966162579272 0.0 0.0 20.921105148787085 0.0 13 0.0011086966162579272 0.0 0.0 22.290345469865628 0.0 14 0.0011086966162579272 0.0 0.0 22.75378065546144 0.0 15 0.0011086966162579272 0.0 0.0 23.504368264668056 0.0 16 0.0011086966162579272 0.0 0.0 25.33039159164486 0.0 17 0.0011086966162579272 0.0 0.0 27.473502150871436 0.0 18 0.0011086966162579272 0.0 0.0 29.517938711251052 0.0 19 0.0011086966162579272 0.0 0.0 30.662113619229235 0.0 20 0.0011086966162579272 0.0 0.0 31.62667967537363 0.0 21 0.0011086966162579272 0.0 0.0 32.763093707038 0.0 22 0.0011086966162579272 0.0 0.0 33.779768504146524 0.0 23 0.0011086966162579272 0.0 0.0 34.438334294203734 0.0 24 0.0011086966162579272 0.0 0.0 34.899552086567034 0.0 25 0.0011086966162579272 0.0 0.0 35.252117610537056 0.0 26 0.0011086966162579272 0.0 0.0 35.45057430484722 0.0 27 0.0011086966162579272 0.0 0.0 35.652357089006166 0.0 28 0.0011086966162579272 0.0 0.0 35.82863985099117 0.0 29 0.0011086966162579272 0.0 0.0 36.01046609605748 0.0 30 0.0011086966162579272 0.0 0.0 36.20116191405384 0.0 31 0.0011086966162579272 0.0 0.0 36.32755332830724 0.0 32 0.0011086966162579272 0.0 0.0 36.49718391059471 0.0 33 0.0011086966162579272 0.0 0.0 36.679010155661004 0.0 34 0.0011086966162579272 0.0 0.0 36.84420595148344 0.0 35 0.0011086966162579272 0.0 0.0 36.978358242050646 0.0 36 0.0011086966162579272 0.0 0.0 37.10585835292031 0.0 37 0.0011086966162579272 0.0 0.0 37.24777151980132 0.0 38 0.0011086966162579272 0.0 0.0 37.41629340547253 0.0 39 0.0011086966162579272 0.0 0.0 37.56375005543483 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGTTTAG 20 6.99871E-4 45.0 1 ACACGAC 25 3.8621743E-5 45.0 26 GCGACCT 25 3.8621743E-5 45.0 11 TATGGGA 25 3.8621743E-5 45.0 4 GGTCAAG 25 3.8621743E-5 45.0 15 CACGACC 25 3.8621743E-5 45.0 27 TGAAACA 20 6.99871E-4 45.0 38 GGGAATC 25 3.8621743E-5 45.0 7 GGGCGCG 20 6.99871E-4 45.0 7 CCTCAGC 20 6.99871E-4 45.0 16 GCGGGAT 20 6.99871E-4 45.0 5 AAACACG 20 6.99871E-4 45.0 40 TAGGGAT 35 1.1953489E-7 45.0 5 AGACACG 25 3.8621743E-5 45.0 24 CGAGACA 25 3.8621743E-5 45.0 22 CCGCGGG 25 3.8621743E-5 45.0 3 AGGGCAC 20 6.99871E-4 45.0 11 TCAAGCG 25 3.8621743E-5 45.0 17 GCTCCAC 20 6.99871E-4 45.0 12 ACGACCA 25 3.8621743E-5 45.0 28 >>END_MODULE