Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933650.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 93272 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 4109 | 4.405394973839952 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCC | 386 | 0.41384338279440774 | No Hit |
CCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC | 311 | 0.33343339909083114 | TruSeq Adapter, Index 21 (95% over 21bp) |
CTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGCT | 304 | 0.3259284672784973 | TruSeq Adapter, Index 14 (95% over 23bp) |
GCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC | 265 | 0.28411527575263745 | TruSeq Adapter, Index 21 (95% over 21bp) |
TCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC | 222 | 0.23801355176258687 | TruSeq Adapter, Index 21 (95% over 21bp) |
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 189 | 0.20263315893301312 | No Hit |
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGC | 182 | 0.19512822712067932 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 144 | 0.15438716871086713 | No Hit |
TTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGG | 115 | 0.12329530834548418 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTCAT | 30 | 2.1440374E-6 | 45.000004 | 17 |
CGCGGGA | 35 | 1.1959492E-7 | 45.000004 | 4 |
GCACCGA | 30 | 2.1440374E-6 | 45.000004 | 9 |
ATTCCTC | 30 | 2.1440374E-6 | 45.000004 | 11 |
TGTATGG | 35 | 1.1959492E-7 | 45.000004 | 2 |
GGGTGTC | 30 | 2.1440374E-6 | 45.000004 | 7 |
TGCGGGA | 30 | 2.1440374E-6 | 45.000004 | 4 |
CATGAAC | 20 | 6.9999555E-4 | 45.0 | 20 |
GGCACGT | 20 | 6.9999555E-4 | 45.0 | 11 |
GGCATGA | 20 | 6.9999555E-4 | 45.0 | 18 |
CGGGGCT | 20 | 6.9999555E-4 | 45.0 | 6 |
CACGTGG | 20 | 6.9999555E-4 | 45.0 | 13 |
ACCACAG | 20 | 6.9999555E-4 | 45.0 | 35 |
GGACTAA | 20 | 6.9999555E-4 | 45.0 | 8 |
ACACTTG | 20 | 6.9999555E-4 | 45.0 | 25 |
TGTTAGG | 25 | 3.8632035E-5 | 45.0 | 2 |
GCACGTG | 20 | 6.9999555E-4 | 45.0 | 12 |
CGGGAGG | 45 | 3.765308E-10 | 45.0 | 6 |
TCGTTCA | 25 | 3.8632035E-5 | 45.0 | 16 |
AGGCACG | 20 | 6.9999555E-4 | 45.0 | 10 |