SRR2933650.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933650.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	93272
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4109	4.405394973839952	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCC	386	0.41384338279440774	No Hit
CCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	311	0.33343339909083114	TruSeq Adapter, Index 21 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGCT	304	0.3259284672784973	TruSeq Adapter, Index 14 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	265	0.28411527575263745	TruSeq Adapter, Index 21 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC	222	0.23801355176258687	TruSeq Adapter, Index 21 (95% over 21bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	189	0.20263315893301312	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGC	182	0.19512822712067932	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	144	0.15438716871086713	No Hit
TTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGG	115	0.12329530834548418	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTCAT	30	2.1440374E-6	45.000004	17
CGCGGGA	35	1.1959492E-7	45.000004	4
GCACCGA	30	2.1440374E-6	45.000004	9
ATTCCTC	30	2.1440374E-6	45.000004	11
TGTATGG	35	1.1959492E-7	45.000004	2
GGGTGTC	30	2.1440374E-6	45.000004	7
TGCGGGA	30	2.1440374E-6	45.000004	4
CATGAAC	20	6.9999555E-4	45.0	20
GGCACGT	20	6.9999555E-4	45.0	11
GGCATGA	20	6.9999555E-4	45.0	18
CGGGGCT	20	6.9999555E-4	45.0	6
CACGTGG	20	6.9999555E-4	45.0	13
ACCACAG	20	6.9999555E-4	45.0	35
GGACTAA	20	6.9999555E-4	45.0	8
ACACTTG	20	6.9999555E-4	45.0	25
TGTTAGG	25	3.8632035E-5	45.0	2
GCACGTG	20	6.9999555E-4	45.0	12
CGGGAGG	45	3.765308E-10	45.0	6
TCGTTCA	25	3.8632035E-5	45.0	16
AGGCACG	20	6.9999555E-4	45.0	10