FastQCFastQC Report
Sat 14 Jan 2017
SRR2933650.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933650.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences93272
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT41094.405394973839952No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCC3860.41384338279440774No Hit
CCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC3110.33343339909083114TruSeq Adapter, Index 21 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGCT3040.3259284672784973TruSeq Adapter, Index 14 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC2650.28411527575263745TruSeq Adapter, Index 21 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGCCGTCTTCTGC2220.23801355176258687TruSeq Adapter, Index 21 (95% over 21bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1890.20263315893301312No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATCGACTCGTATGC1820.19512822712067932No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1440.15438716871086713No Hit
TTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGG1150.12329530834548418No Hit

[FAIL]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGTTCAT302.1440374E-645.00000417
CGCGGGA351.1959492E-745.0000044
GCACCGA302.1440374E-645.0000049
ATTCCTC302.1440374E-645.00000411
TGTATGG351.1959492E-745.0000042
GGGTGTC302.1440374E-645.0000047
TGCGGGA302.1440374E-645.0000044
CATGAAC206.9999555E-445.020
GGCACGT206.9999555E-445.011
GGCATGA206.9999555E-445.018
CGGGGCT206.9999555E-445.06
CACGTGG206.9999555E-445.013
ACCACAG206.9999555E-445.035
GGACTAA206.9999555E-445.08
ACACTTG206.9999555E-445.025
TGTTAGG253.8632035E-545.02
GCACGTG206.9999555E-445.012
CGGGAGG453.765308E-1045.06
TCGTTCA253.8632035E-545.016
AGGCACG206.9999555E-445.010