##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933648.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 143633 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.953422959904756 33.0 31.0 34.0 30.0 34.0 2 32.197628678646275 34.0 31.0 34.0 30.0 34.0 3 32.22693252943265 33.0 31.0 34.0 30.0 34.0 4 35.890742378144296 37.0 35.0 37.0 35.0 37.0 5 35.93379655093189 37.0 35.0 37.0 35.0 37.0 6 35.92717550980624 37.0 35.0 37.0 35.0 37.0 7 35.97822923701378 37.0 35.0 37.0 35.0 37.0 8 35.79556926333085 37.0 35.0 37.0 35.0 37.0 9 37.5955525540788 39.0 37.0 39.0 35.0 39.0 10 37.137656388155925 39.0 37.0 39.0 33.0 39.0 11 37.19428682823585 39.0 37.0 39.0 34.0 39.0 12 37.263045400430265 39.0 37.0 39.0 34.0 39.0 13 37.18588346689131 39.0 37.0 39.0 33.0 39.0 14 38.25804654919134 40.0 38.0 41.0 33.0 41.0 15 38.28246294375248 40.0 38.0 41.0 33.0 41.0 16 38.38649196215354 40.0 38.0 41.0 34.0 41.0 17 38.397234618785376 40.0 38.0 41.0 34.0 41.0 18 37.8979273565267 39.0 38.0 40.0 34.0 41.0 19 37.35326839932328 37.0 37.0 40.0 34.0 41.0 20 36.621556327584884 37.0 35.0 40.0 33.0 41.0 21 36.49954397666274 37.0 35.0 40.0 33.0 41.0 22 36.51212465102031 37.0 35.0 40.0 33.0 41.0 23 36.4528276928004 37.0 35.0 40.0 33.0 41.0 24 36.28134899361567 37.0 35.0 40.0 33.0 41.0 25 36.165734893791814 36.0 35.0 40.0 32.0 41.0 26 36.153390933838324 36.0 35.0 40.0 32.0 41.0 27 36.080837968990416 36.0 35.0 40.0 32.0 41.0 28 35.92864453154915 36.0 35.0 40.0 32.0 41.0 29 35.82776938447293 36.0 35.0 40.0 31.0 41.0 30 35.616453043520636 36.0 35.0 40.0 31.0 41.0 31 35.0449270014551 36.0 35.0 40.0 27.0 41.0 32 34.37075741647114 36.0 34.0 40.0 23.0 41.0 33 33.637924432407594 36.0 33.0 40.0 18.0 41.0 34 33.0358204590867 36.0 33.0 40.0 15.0 41.0 35 32.65846985024333 37.0 33.0 40.0 10.0 41.0 36 32.34290866305097 36.0 31.0 40.0 10.0 41.0 37 31.940891020865678 35.0 31.0 40.0 9.0 41.0 38 31.785063321103088 35.0 30.0 40.0 9.0 41.0 39 31.81293296108833 36.0 30.0 40.0 9.0 41.0 40 31.695919461405108 35.0 30.0 40.0 8.0 41.0 41 31.466738145133778 35.0 29.0 40.0 8.0 41.0 42 31.10982155911246 35.0 28.0 40.0 8.0 41.0 43 30.798848454046077 35.0 26.0 39.0 7.0 41.0 44 30.69071870670389 35.0 26.0 39.0 7.0 41.0 45 30.68455020782132 35.0 25.0 39.0 7.0 41.0 46 30.230706035521084 35.0 23.0 39.0 7.0 41.0 47 29.8362911030195 35.0 23.0 39.0 7.0 40.0 48 29.756936080148712 35.0 23.0 39.0 7.0 40.0 49 29.769857901735673 35.0 23.0 39.0 7.0 40.0 50 29.663858584030134 35.0 23.0 39.0 7.0 40.0 51 28.424421964311822 34.0 20.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 0.0 12 0.0 13 2.0 14 6.0 15 9.0 16 6.0 17 28.0 18 76.0 19 144.0 20 256.0 21 402.0 22 679.0 23 1127.0 24 2052.0 25 4012.0 26 5831.0 27 6078.0 28 5359.0 29 4782.0 30 4577.0 31 4789.0 32 5197.0 33 6076.0 34 8420.0 35 12540.0 36 16803.0 37 16636.0 38 24546.0 39 13198.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.44353317134642 4.037373027089875 34.27067595886739 43.24841784269632 2 48.91981647671496 3.9106611990280786 32.27113546329882 14.898386860958137 3 14.307297069614922 3.917623387383122 64.78942861320171 16.985650929800254 4 12.215855687759776 4.2643403674643015 65.48843232404809 18.031371620727825 5 10.234416881914324 5.126955504654223 66.35661721192206 18.282010401509403 6 13.824817416610388 6.236032109612694 69.01826182005529 10.920888653721637 7 50.400673939832764 2.4639184588499856 42.33010519866605 4.8053024026512015 8 48.21245813984252 2.5558193451365634 42.07807398021346 7.153648534807461 9 43.50671503066844 4.473902236951118 45.19365326909554 6.825729463284899 10 21.606455341042796 16.125124449116846 49.23938092221147 13.029039287628889 11 14.318436570982993 14.140900767929377 52.311794643292274 19.228868017795353 12 13.770512347441047 11.510586007393844 57.41438248870385 17.30451915646126 13 16.77608906031344 12.744982002743102 58.45244477244087 12.026484164502586 14 13.697409369713087 15.058517193124143 56.325496229975 14.918577207187763 15 9.44629716012337 13.835260699142953 59.11663754151205 17.601804599221627 16 8.484122729456322 14.039949036781241 56.64436445663601 20.831563777126426 17 8.236268824016765 14.104001169647642 54.69355927955275 22.966170726782842 18 9.041794016695327 12.991443470511651 59.292084688059155 18.67467782473387 19 9.6419346529001 15.107252511609449 59.619307540746206 15.631505294744244 20 9.697632159740449 19.26646383491259 56.41530845975507 14.620595545591891 21 8.965209944789846 19.968252421101003 56.987600342539665 14.078937291569485 22 7.40985706627307 19.04993977707073 53.403465777363145 20.13673737929306 23 7.622203811101906 19.079180968161914 51.5501312372505 21.748483983485688 24 9.536109389903434 18.469989487095585 51.28835295510085 20.705548167900133 25 7.731510168276093 20.465352669651125 48.78683867913362 23.016298482939156 26 8.00164307645179 20.56143086895073 51.14005834313842 20.296867711459065 27 11.039942074592886 19.88679481734699 52.54642039085725 16.52684271720287 28 7.712016040881969 17.62129872661575 52.437114033683066 22.22957119881921 29 9.989347851816783 15.12953151434559 52.558952329896336 22.322168303941297 30 17.557246593749348 16.869382384271024 48.506262488425364 17.06710853355427 31 15.77910368787117 23.816253924933687 42.88568782939854 17.518954557796608 32 13.749625782375915 21.889120188257575 43.09733835539187 21.263915673974644 33 18.026498088879297 18.591131564473347 41.91515877270543 21.46721157394192 34 17.095653505809945 17.6136403194252 40.95925031155792 24.331455863206923 35 18.03346027723434 16.45513217714592 38.78565510711327 26.725752438506472 36 21.969185354340574 20.9868205774439 37.69816128605543 19.345832782160088 37 20.823209151100375 24.811846859704943 39.12053636699087 15.244407622203813 38 17.291987217422182 23.656123592767678 43.28044390912952 15.771445280680624 39 18.197767922413373 18.343277659033788 47.33034887525847 16.12860554329437 40 24.47278828681431 14.973578495192609 43.45867593101864 17.09495728697444 41 27.028607631950873 18.591131564473347 35.318485306301476 19.061775497274304 42 23.397826404795556 23.41592809451867 36.32591396127631 16.86033153940947 43 18.213084736794467 21.733167169104593 43.426649864585436 16.627098229515504 44 16.197531208009302 17.924153920060153 43.31107753789171 22.567237334038833 45 21.946906351604436 13.778170754631597 41.69933093369908 22.575591960064887 46 24.72690816177341 15.1629500184498 44.16464183022008 15.945499989556716 47 17.581614252992 21.270181643494183 45.53340806082168 15.61479604269214 48 16.2448740888236 19.539381618430305 47.05951974824727 17.156224544498826 49 20.51756908231395 14.656102706202615 47.42364219921606 17.402686012267377 50 19.801856119415454 12.055029136758266 43.82767191383596 24.31544282999032 51 16.98147361678723 11.822492045699805 40.5248097582032 30.67122457930977 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 267.0 1 486.0 2 705.0 3 10400.0 4 20095.0 5 12075.5 6 4056.0 7 3719.0 8 3382.0 9 3274.0 10 3166.0 11 3097.0 12 3028.0 13 2770.0 14 2512.0 15 2325.0 16 2138.0 17 1987.5 18 1837.0 19 1631.5 20 1426.0 21 1312.0 22 1198.0 23 1061.5 24 925.0 25 852.0 26 733.5 27 688.0 28 672.0 29 656.0 30 663.0 31 670.0 32 774.5 33 879.0 34 953.0 35 1027.0 36 1213.0 37 1399.0 38 1628.0 39 1857.0 40 2805.5 41 3754.0 42 4941.5 43 6129.0 44 7017.0 45 7905.0 46 10356.5 47 12808.0 48 15771.0 49 18734.0 50 18580.5 51 18427.0 52 14769.5 53 11112.0 54 7977.5 55 4843.0 56 3509.5 57 2176.0 58 1721.0 59 1266.0 60 1162.5 61 1059.0 62 950.0 63 841.0 64 737.5 65 634.0 66 512.5 67 391.0 68 352.0 69 313.0 70 266.5 71 220.0 72 183.5 73 147.0 74 121.0 75 71.5 76 48.0 77 35.5 78 23.0 79 15.0 80 7.0 81 4.5 82 2.0 83 1.0 84 0.0 85 3.0 86 6.0 87 4.0 88 2.0 89 1.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 143633.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 48.406703194948236 #Duplication Level Percentage of deduplicated Percentage of total 1 77.66079852721207 37.59303224189427 2 10.612990449890692 10.274797574373578 3 4.468703256242089 6.489455765736286 4 2.399033482913359 4.645172070485195 5 1.3419054193993787 3.247860867627913 6 0.805430905534461 2.3392952872947026 7 0.5508572086066046 1.8665626979872312 8 0.38257968012886895 1.4815536819533115 9 0.25745023587619376 1.1216085439975492 >10 1.389368312046945 12.142056491196312 >50 0.08341962950178346 2.7110761454540393 >100 0.038833275802554364 2.9561451755515793 >500 0.005753077896674721 2.1081506339072495 >1k 0.0014382694741686803 1.2350922141847627 >5k 0.0 0.0 >10k+ 0.0014382694741686803 9.788140608356018 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14059 9.788140608356018 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCC 1774 1.2350922141847627 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGC 995 0.6927377413268538 No Hit CCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC 790 0.5500128800484568 No Hit CTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGCT 697 0.4852645283465499 Illumina Single End Adapter 2 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC 546 0.38013548418538917 No Hit GCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTGC 468 0.3258304150160478 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCG 303 0.21095430715782587 No Hit TCCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG 208 0.14481351778491014 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 196 0.13645889175885764 No Hit CGCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCTG 187 0.13019292223931828 No Hit TTCCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATGCCGTCTTCT 186 0.1294967034038139 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 177 0.12323073388427451 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 163 0.11348367018721324 No Hit CGTTTTTTTTTTCTGTCTCTTATACACATCTGACGCCGATTGGATCGTATG 160 0.11139501368070011 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 157 0.10930635717418698 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 156 0.1086101383386826 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5527977553904744 0.0 2 0.0 0.0 0.0 2.0002367144040716 0.0 3 0.0 0.0 0.0 2.7897488738660337 0.0 4 0.0 0.0 0.0 3.937813733612749 0.0 5 0.0 0.0 0.0 6.486670890394269 0.0 6 0.0 0.0 0.0 8.172912909985866 0.0 7 0.0 0.0 0.0 9.817381799447203 0.0 8 0.0 0.0 0.0 12.552825604143894 0.0 9 0.0 0.0 0.0 13.811589258735806 0.0 10 0.0 0.0 0.0 16.76703821545188 0.0 11 0.0 0.0 0.0 24.121197774884603 0.0 12 0.0 0.0 0.0 30.181782737950194 0.0 13 0.0 0.0 0.0 32.253729992411216 0.0 14 0.0 0.0 0.0 33.05159677789923 0.0 15 0.0 0.0 0.0 34.147445224983116 0.0 16 6.962188355043757E-4 0.0 0.0 36.839723461878535 0.0 17 6.962188355043757E-4 0.0 0.0 39.76941232168095 0.0 18 0.0020886565065131274 0.0 0.0 42.41574011543308 0.0 19 0.0020886565065131274 0.0 0.0 44.078310694617535 0.0 20 0.0020886565065131274 0.0 0.0 45.43941851802859 0.0 21 0.0020886565065131274 0.0 0.0 47.016354180446 0.0 22 0.0020886565065131274 0.0 0.0 48.35518300112091 0.0 23 0.0020886565065131274 0.0 0.0 49.274888082822194 0.0 24 0.0020886565065131274 0.0 0.0 49.79148245876644 0.0 25 0.0020886565065131274 0.0 0.0 50.12427506213753 0.0 26 0.0020886565065131274 0.0 0.0 50.38814200079369 0.0 27 0.0020886565065131274 0.0 0.0 50.584475712405926 0.0 28 0.0020886565065131274 0.0 0.0 50.759922858953026 0.0 29 0.0020886565065131274 0.0 0.0 50.92771159830958 0.0 30 0.0020886565065131274 0.0 0.0 51.12961506060585 0.0 31 0.002784875342017503 0.0 0.0 51.2806945479103 0.0 32 0.002784875342017503 0.0 0.0 51.42202697151769 0.0 33 0.002784875342017503 0.0 0.0 51.54525770540196 0.0 34 0.003481094177521879 0.0 0.0 51.67057709579275 0.0 35 0.004177313013026255 0.0 0.0 51.79450404851253 0.0 36 0.00487353184853063 0.0 0.0 51.92260831424533 0.0 37 0.00487353184853063 0.0 0.0 52.05140879881364 0.0 38 0.00487353184853063 0.0 0.0 52.18577903406599 0.0 39 0.00487353184853063 0.0 0.0 52.339643396712454 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGTA 35 1.2020246E-7 45.0 5 TTTTGCG 40 6.7429937E-9 45.0 1 GTGTTTG 35 1.2020246E-7 45.0 1 TGTTTAG 20 7.012661E-4 45.0 1 TCTGCGG 20 7.012661E-4 45.0 2 ATAGCAA 20 7.012661E-4 45.0 10 CGGGATG 20 7.012661E-4 45.0 6 GGGATTC 20 7.012661E-4 45.0 7 TGGGTAG 20 7.012661E-4 45.0 6 TGGGTAC 35 1.2020246E-7 45.0 6 TCTTCGG 35 1.2020246E-7 45.0 2 TGCAGGG 45 3.8016879E-10 45.0 3 GACTTTG 20 7.012661E-4 45.0 1 GGTATGC 45 3.8016879E-10 45.0 8 CGTTTTG 20 7.012661E-4 45.0 1 CTCTGTG 20 7.012661E-4 45.0 1 GTATGCT 25 3.8737202E-5 44.999996 9 GCCTCGG 25 3.8737202E-5 44.999996 2 GGGTATG 60 0.0 44.999996 7 TATGCTA 25 3.8737202E-5 44.999996 10 >>END_MODULE