SRR2933644.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933644.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	95863
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5530	5.768649009524008	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCC	496	0.5174050467855168	No Hit
CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	464	0.4840240760251609	No Hit
GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	423	0.4412547072384549	No Hit
CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT	409	0.42665053253079915	No Hit
TCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC	345	0.3598885910100873	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGC	266	0.2774793194454586	No Hit
TCCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG	150	0.15647330043916838	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	148	0.15438698976664617	No Hit
GGGCCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTC	105	0.10953131030741789	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	104	0.10848815497115676	No Hit
GCCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG	97	0.10118606761732889	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCCCTCG	35	1.1964221E-7	45.000004	13
GCCCTAA	20	7.0009363E-4	45.000004	40
CGCGACC	20	7.0009363E-4	45.000004	10
CGTTCAT	30	2.1446685E-6	45.000004	17
TGTGAGG	20	7.0009363E-4	45.000004	2
TGCACCA	20	7.0009363E-4	45.000004	28
AATTCTC	20	7.0009363E-4	45.000004	13
GCGATGC	20	7.0009363E-4	45.000004	9
ATTAGGG	20	7.0009363E-4	45.000004	27
GGCGCGA	20	7.0009363E-4	45.000004	8
CCTGCAC	20	7.0009363E-4	45.000004	26
TTCCGAT	20	7.0009363E-4	45.000004	13
GTACTCC	20	7.0009363E-4	45.000004	21
TCTGGAC	20	7.0009363E-4	45.000004	16
TATGCCC	35	1.1964221E-7	45.000004	10
GGCCGAT	20	7.0009363E-4	45.000004	8
AATTAGG	20	7.0009363E-4	45.000004	26
GCGCGAC	20	7.0009363E-4	45.000004	9
GACATTA	20	7.0009363E-4	45.000004	20
TGTTAGG	20	7.0009363E-4	45.000004	2