##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933644.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 95863 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.926561864327216 33.0 31.0 34.0 30.0 34.0 2 32.13629867623588 33.0 31.0 34.0 30.0 34.0 3 32.22402804001544 33.0 31.0 34.0 30.0 34.0 4 35.84014687627135 37.0 35.0 37.0 35.0 37.0 5 35.86473404754702 37.0 35.0 37.0 35.0 37.0 6 35.8212449015783 37.0 35.0 37.0 35.0 37.0 7 35.89741610423208 37.0 35.0 37.0 35.0 37.0 8 35.70065614470651 37.0 35.0 37.0 35.0 37.0 9 37.52350750550264 39.0 37.0 39.0 35.0 39.0 10 37.05062432846875 39.0 37.0 39.0 33.0 39.0 11 37.09428037929128 39.0 37.0 39.0 33.0 39.0 12 37.214024180340694 39.0 37.0 39.0 34.0 39.0 13 37.13918821651732 39.0 37.0 39.0 33.0 39.0 14 38.21456662111555 40.0 37.0 41.0 33.0 41.0 15 38.228471881747915 40.0 37.0 41.0 33.0 41.0 16 38.32793674306041 40.0 38.0 41.0 34.0 41.0 17 38.31494945912396 40.0 38.0 41.0 34.0 41.0 18 37.99732952233917 39.0 37.0 40.0 34.0 41.0 19 37.65127317108791 39.0 37.0 40.0 34.0 41.0 20 37.13540156264669 38.0 35.0 40.0 33.0 41.0 21 36.99713132282528 38.0 35.0 40.0 33.0 41.0 22 37.02917705475522 38.0 35.0 40.0 33.0 41.0 23 36.97505815591 38.0 35.0 40.0 33.0 41.0 24 36.87345482615817 38.0 35.0 40.0 33.0 41.0 25 36.77384392309859 38.0 35.0 40.0 33.0 41.0 26 36.730740744604276 38.0 35.0 40.0 33.0 41.0 27 36.646464224987746 38.0 35.0 40.0 32.0 41.0 28 36.57361025630327 38.0 35.0 40.0 32.0 41.0 29 36.48139532457778 38.0 35.0 40.0 32.0 41.0 30 36.35079227647789 38.0 35.0 40.0 31.0 41.0 31 35.98029479569803 38.0 35.0 40.0 30.0 41.0 32 35.55835932528713 38.0 35.0 40.0 29.0 41.0 33 35.10735111565463 38.0 35.0 40.0 24.0 41.0 34 34.753032974140176 38.0 35.0 40.0 21.0 41.0 35 34.49680272889436 38.0 35.0 40.0 18.0 41.0 36 34.30871139021312 38.0 34.0 40.0 18.0 41.0 37 34.11848158309254 38.0 34.0 40.0 17.0 41.0 38 34.01495884752198 38.0 34.0 40.0 16.0 41.0 39 33.860446679114986 38.0 34.0 40.0 15.0 41.0 40 33.551015511719854 38.0 33.0 40.0 15.0 41.0 41 33.39457350594077 38.0 33.0 40.0 14.0 41.0 42 33.403826293773406 38.0 33.0 40.0 12.0 41.0 43 33.324515193557474 38.0 33.0 40.0 12.0 41.0 44 33.24344116082326 38.0 33.0 40.0 10.0 41.0 45 33.13967849952537 37.0 33.0 40.0 10.0 41.0 46 32.81630034528442 37.0 32.0 40.0 10.0 41.0 47 32.62550723428226 37.0 31.0 40.0 10.0 41.0 48 32.63100466290435 37.0 31.0 40.0 10.0 41.0 49 32.710086268946306 37.0 31.0 40.0 10.0 41.0 50 32.609494799870646 37.0 31.0 40.0 10.0 41.0 51 31.505659117699217 35.0 29.0 39.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 1.0 13 2.0 14 1.0 15 4.0 16 7.0 17 13.0 18 21.0 19 57.0 20 105.0 21 185.0 22 310.0 23 457.0 24 885.0 25 1640.0 26 2488.0 27 2842.0 28 2736.0 29 2497.0 30 2438.0 31 2726.0 32 3099.0 33 3848.0 34 5341.0 35 7605.0 36 10070.0 37 12111.0 38 19891.0 39 14479.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.964021572452353 4.992541439345733 38.77408384882593 33.26935313937599 2 40.0602943784359 4.946642604550243 37.16240885430249 17.830654162711372 3 19.248302264690235 5.00818876938965 56.7737291760116 18.969779789908515 4 15.645243733244317 5.2919270208526745 56.87595839896519 22.18687084693782 5 11.91283394010202 7.048600607116405 58.69835077141337 22.340214681368202 6 16.35458936190188 8.274308127223225 62.27220095344398 13.098901557430917 7 60.33297518333455 3.3099318819565418 30.75326246831416 5.603830466394751 8 58.310296986324225 3.6771225603204574 30.642688002670475 7.369892450684831 9 52.92970176188936 5.615305175093623 33.46963896393812 7.985354099078894 10 25.944316368150382 18.968736634572252 38.834586858329075 16.25236013894829 11 16.517321594358616 16.51314897301357 43.19184669789178 23.77768273473603 12 15.431396889310786 13.138541460208838 50.400050071456135 21.030011579024233 13 19.096001585596113 14.789856357510198 51.74154783388795 14.372594223005747 14 16.676924360806566 16.618507661975947 48.99074721216736 17.713820765050123 15 11.755317484326591 16.155346692676005 51.48180215515893 20.607533667838478 16 11.181582049382973 15.691142568039806 48.44100434995775 24.686271032619466 17 10.99172777818345 16.02495227564337 47.037960422686545 25.945359523486644 18 12.058875687178578 15.1466154825115 50.62328531341602 22.1712235168939 19 13.04674379061786 17.626195716804187 50.77037021582884 18.55669027674911 20 12.982068159769671 20.88918560862898 48.44413381596653 17.684612415634813 21 12.249773113714364 22.395501914190042 47.68993250784974 17.664792464245853 22 10.322022052303808 20.259119785527265 45.46905479694981 23.949803365219115 23 10.656874915243629 21.199002743498536 43.3013780081992 24.842744333058636 24 12.68163942292647 20.248688232164653 43.23357291134223 23.836099433566652 25 11.672908212761962 22.42992604028666 41.21298102500444 24.684184721946945 26 10.96460573944066 22.603089826106004 44.002378394166676 22.42992604028666 27 12.817249616640414 21.220909005560017 44.91096669205012 21.050874685749456 28 10.42529443059366 18.36266338420454 45.60257867999124 25.609463505210563 29 12.65556053951994 16.482897468262 45.200963875530704 25.660578116687354 30 18.255218384569645 18.71212042185202 41.18481583092538 21.847845362652954 31 15.997830236900576 24.787457100236796 35.22526939486559 23.98944326799704 32 13.634040244932875 23.013049873256627 36.89849055422843 26.45441932758207 33 17.45824770766615 18.148816540271014 35.85116259662227 28.541773155440573 34 16.7457726129998 17.215192514317305 37.44719026110178 28.591844611581113 35 15.073594608973224 16.694658001523006 39.75569302024765 28.476054369256126 36 16.851131301962173 17.992343239831843 37.82481249282831 27.331712965377676 37 14.559319028196487 20.04005716491243 35.49231716094844 29.908306645942645 38 16.56947936117167 18.680825761764183 36.2955467698695 28.454148107194644 39 22.527982641895207 17.436341445604665 37.850891376234834 22.184784536265294 40 22.089857400665533 20.946559152123342 35.25239143360837 21.711192013602744 41 15.316649802322063 21.819680168573903 33.87334007907118 28.990329950032862 42 15.31352033631328 17.40400363018057 39.24350375014343 28.038972283362718 43 16.203331838144017 14.978667473373461 43.69882019131469 25.119180497167832 44 18.41377799568134 15.514849316211677 39.011923265493465 27.059449422613525 45 22.350646234730814 15.236326841429957 35.52361182103627 26.88941510280296 46 23.054776086707072 17.211019892972264 37.53168584333893 22.202518176981734 47 15.166435433900464 20.724367065499724 41.751249178515174 22.357948322084642 48 14.767950095448711 18.78096867404525 42.714081553884185 23.736999676621846 49 20.382212115206073 14.25367451467198 43.35979470702983 22.00431866309212 50 20.092214931725483 12.671207869563858 39.3384308857432 27.898146312967466 51 17.62828202747671 12.90696097555887 35.73850182030606 33.726255176658356 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 193.0 1 404.5 2 616.0 3 4413.5 4 8211.0 5 5047.0 6 1883.0 7 1708.5 8 1534.0 9 1497.0 10 1460.0 11 1357.5 12 1255.0 13 1224.5 14 1194.0 15 1078.0 16 962.0 17 868.5 18 775.0 19 710.0 20 645.0 21 603.5 22 562.0 23 520.0 24 478.0 25 439.5 26 414.0 27 427.0 28 441.0 29 455.0 30 474.5 31 494.0 32 556.5 33 619.0 34 669.0 35 719.0 36 802.5 37 886.0 38 1121.0 39 1356.0 40 1683.0 41 2010.0 42 2655.0 43 3300.0 44 4266.5 45 5233.0 46 7114.0 47 8995.0 48 11276.0 49 13557.0 50 13646.5 51 13736.0 52 11344.5 53 8953.0 54 6655.5 55 4358.0 56 3447.5 57 2537.0 58 2153.5 59 1770.0 60 1637.5 61 1505.0 62 1410.5 63 1316.0 64 1198.0 65 1080.0 66 925.0 67 770.0 68 666.0 69 562.0 70 497.5 71 433.0 72 343.5 73 254.0 74 218.5 75 133.5 76 84.0 77 62.5 78 41.0 79 33.0 80 25.0 81 19.5 82 14.0 83 12.0 84 10.0 85 7.5 86 5.0 87 5.5 88 6.0 89 3.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 95863.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.92850213325266 #Duplication Level Percentage of deduplicated Percentage of total 1 78.86623928545703 45.68603110689213 2 11.616725491608442 13.458790148441006 3 4.293020240582006 7.460646964939549 4 1.9376215515378519 4.489740567267872 5 0.9454008499603832 2.7382827576854467 6 0.5186198948354103 1.80257242105922 7 0.38356263055535544 1.5553446063653338 8 0.24130231218036446 1.1182625204719234 9 0.19448246056327884 1.0139469868458113 >10 0.9291939782467766 9.566777588850755 >50 0.054022905712021896 2.305373293137081 >100 0.01800763523734063 3.0355820285198667 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0018007635237340634 5.768649009524008 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5530 5.768649009524008 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCC 496 0.5174050467855168 No Hit CCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC 464 0.4840240760251609 No Hit GCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC 423 0.4412547072384549 No Hit CTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGCT 409 0.42665053253079915 No Hit TCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTGC 345 0.3598885910100873 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGC 266 0.2774793194454586 No Hit TCCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG 150 0.15647330043916838 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 148 0.15438698976664617 No Hit GGGCCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTC 105 0.10953131030741789 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 104 0.10848815497115676 No Hit GCCTGTCTCTTATACACATCTGACGCTCCTGACTTCGTATGCCGTCTTCTG 97 0.10118606761732889 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.46837674598124407 0.0 2 0.0 0.0 0.0 1.9183626633842046 0.0 3 0.0 0.0 0.0 2.7288943596590967 0.0 4 0.0 0.0 0.0 3.854458967484848 0.0 5 0.0 0.0 0.0 6.350729687157715 0.0 6 0.0 0.0 0.0 8.332724826053848 0.0 7 0.0 0.0 0.0 10.17389399455473 0.0 8 0.0 0.0 0.0 12.999801800486111 0.0 9 0.0 0.0 0.0 14.29122810677738 0.0 10 0.0 0.0 0.0 17.293429164536892 0.0 11 0.0 0.0 0.0 23.93624234584772 0.0 12 0.0 0.0 0.0 30.01366533490502 0.0 13 0.0 0.0 0.0 31.957063726359493 0.0 14 0.0 0.0 0.0 32.60277687950513 0.0 15 0.0 0.0 0.0 33.734600419348446 0.0 16 0.0 0.0 0.0 36.365438177399 0.0 17 0.0 0.0 0.0 39.65867957397536 0.0 18 0.0 0.0 0.0 42.509623107977006 0.0 19 0.0 0.0 0.0 44.06705402501486 0.0 20 0.0 0.0 0.0 45.442975913543286 0.0 21 0.0 0.0 0.0 46.989975277218534 0.0 22 0.0 0.0 0.0 48.34607721435799 0.0 23 0.0 0.0 0.0 49.319341143089616 0.0 24 0.0 0.0 0.0 49.875342937316795 0.0 25 0.0 0.0 0.0 50.24774939236202 0.0 26 0.0 0.0 0.0 50.50645191575477 0.0 27 0.0 0.0 0.0 50.68378832291916 0.0 28 0.0 0.0 0.0 50.878858370799996 0.0 29 0.0 0.0 0.0 51.04993584594682 0.0 30 0.0 0.0 0.0 51.241876427818866 0.0 31 0.0 0.0 0.0 51.37331400018777 0.0 32 0.0 0.0 0.0 51.50892419390171 0.0 33 0.0 0.0 0.0 51.64557754295192 0.0 34 0.0010431553362611227 0.0 0.0 51.78536035801091 0.0 35 0.0010431553362611227 0.0 0.0 51.91471161970729 0.0 36 0.0010431553362611227 0.0 0.0 52.0378039493861 0.0 37 0.0010431553362611227 0.0 0.0 52.16298258973744 0.0 38 0.0010431553362611227 0.0 0.0 52.31319695815904 0.0 39 0.0010431553362611227 0.0 0.0 52.43107351115655 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCCCTCG 35 1.1964221E-7 45.000004 13 GCCCTAA 20 7.0009363E-4 45.000004 40 CGCGACC 20 7.0009363E-4 45.000004 10 CGTTCAT 30 2.1446685E-6 45.000004 17 TGTGAGG 20 7.0009363E-4 45.000004 2 TGCACCA 20 7.0009363E-4 45.000004 28 AATTCTC 20 7.0009363E-4 45.000004 13 GCGATGC 20 7.0009363E-4 45.000004 9 ATTAGGG 20 7.0009363E-4 45.000004 27 GGCGCGA 20 7.0009363E-4 45.000004 8 CCTGCAC 20 7.0009363E-4 45.000004 26 TTCCGAT 20 7.0009363E-4 45.000004 13 GTACTCC 20 7.0009363E-4 45.000004 21 TCTGGAC 20 7.0009363E-4 45.000004 16 TATGCCC 35 1.1964221E-7 45.000004 10 GGCCGAT 20 7.0009363E-4 45.000004 8 AATTAGG 20 7.0009363E-4 45.000004 26 GCGCGAC 20 7.0009363E-4 45.000004 9 GACATTA 20 7.0009363E-4 45.000004 20 TGTTAGG 20 7.0009363E-4 45.000004 2 >>END_MODULE