SRR2933642.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933642.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	311565
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14304	4.591016320831929	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCC	994	0.31903455137772213	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGC	501	0.16080111694189014	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	20	7.025363E-4	45.0	6
TATGGGT	40	6.7866495E-9	45.0	4
TTCCGAT	20	7.025363E-4	45.0	13
TCGATCA	20	7.025363E-4	45.0	17
CCCACGA	20	7.025363E-4	45.0	39
TCTACGG	20	7.025363E-4	45.0	2
TAGGGTA	40	6.7866495E-9	45.0	5
TTACGTG	20	7.025363E-4	45.0	1
CGGTATT	20	7.025363E-4	45.0	43
CGTTTTT	7170	0.0	44.027195	1
GCCCTAC	55	6.002665E-11	40.909092	26
CTTTGCG	55	6.002665E-11	40.909092	1
GCACGGG	45	1.920489E-8	40.0	3
GCTTAGG	45	1.920489E-8	40.0	2
GTTTTTT	8230	0.0	39.422844	2
CGTGGGA	75	0.0	39.0	4
GCGATGT	105	0.0	38.57143	9
CGCGGAT	35	6.2336385E-6	38.571426	23
CATGCAT	35	6.2336385E-6	38.571426	25
GCGCGGA	35	6.2336385E-6	38.571426	22