SRR2933641.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933641.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	317261
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14164	4.464463013102776	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGCC	985	0.31046992854463673	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCATCATCCTCGTATGC	516	0.1626421148518097	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAT	35	1.2082091E-7	45.0	6
CGTGGGC	20	7.025559E-4	45.0	4
ACGGGAT	20	7.025559E-4	45.0	5
GGCGATA	35	1.2082091E-7	45.0	8
CCCCGAT	30	2.1605174E-6	44.999996	40
CGTTTTT	7310	0.0	43.953484	1
TTGTGCG	65	0.0	41.538464	1
GCGGGTA	50	1.0768417E-9	40.5	5
CGGGATA	45	1.920671E-8	40.000004	6
GTTTTTT	8370	0.0	39.22043	2
CGTTCAT	35	6.2340005E-6	38.571426	17
ATCCCCG	35	6.2340005E-6	38.571426	38
ACACGCG	260	0.0	38.076927	36
TACACGC	260	0.0	38.076927	35
TGGGACT	300	0.0	37.5	6
GTAGGGC	30	1.13806E-4	37.499996	4
CGGTAGG	30	1.13806E-4	37.499996	31
TGGGCCG	145	0.0	37.24138	6
GCCGATT	55	2.73576E-9	36.81818	9
TTTGGGC	795	0.0	36.792454	4