SRR2933636.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933636.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	169466
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5640	3.3281012120425335	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCC	732	0.4319450509246692	No Hit
CTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGCT	567	0.33458038780640365	Illumina PCR Primer Index 8 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC	478	0.2820624786092785	Illumina PCR Primer Index 8 (95% over 23bp)
GCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC	382	0.2254139473404695	RNA PCR Primer, Index 40 (95% over 24bp)
TCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC	370	0.2183328809318683	RNA PCR Primer, Index 40 (95% over 24bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGC	355	0.20948154792111692	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	341	0.2012203037777489	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	223	0.1315898174265044	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	212	0.12509883988528672	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	182	0.10739617386378389	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTTGTG	35	1.2037526E-7	45.0	1
TTTACGG	25	3.8766942E-5	45.0	2
TTTCGCG	20	7.016254E-4	45.0	1
CGTCTGG	20	7.016254E-4	45.0	2
AGGGTCT	20	7.016254E-4	45.0	6
TACGGGG	35	1.2037526E-7	45.0	4
GGCCACG	20	7.016254E-4	45.0	19
GCCGATT	25	3.8766942E-5	45.0	9
CTACGGG	20	7.016254E-4	45.0	3
CGGGATC	35	1.2037526E-7	45.0	6
TTACGGG	35	1.2037526E-7	45.0	3
TGCTAGG	25	3.8766942E-5	45.0	2
GTCTTCG	20	7.016254E-4	45.0	1
GGTCTAT	20	7.016254E-4	45.0	8
TGGTGAC	20	7.016254E-4	45.0	14
CCACGTG	25	3.8766942E-5	45.0	21
GCTTTAG	35	1.2037526E-7	45.0	1
CCTACCA	30	2.154522E-6	44.999996	7
ATATACT	30	2.154522E-6	44.999996	17
CTACCAC	30	2.154522E-6	44.999996	8