SRR2933635.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933635.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	172143
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5643	3.2780885659016055	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCC	713	0.4141905276427157	No Hit
CTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGCT	595	0.3456428666864177	Illumina PCR Primer Index 8 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC	558	0.3241491085899514	Illumina PCR Primer Index 8 (95% over 23bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGC	394	0.22887947810831694	No Hit
TCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC	378	0.2195848800125477	RNA PCR Primer, Index 40 (95% over 24bp)
GCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC	364	0.21145210667874964	RNA PCR Primer, Index 40 (95% over 24bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	342	0.19867203429706695	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	205	0.11908703810204306	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	201	0.11676338857810077	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTAGATA	20	7.0165604E-4	45.000004	19
GTGCAGG	20	7.0165604E-4	45.000004	2
CCGGGAT	25	3.8769474E-5	45.000004	5
ATAGGTG	25	3.8769474E-5	45.000004	24
TTGCTAG	20	7.0165604E-4	45.000004	1
TAGGTGG	25	3.8769474E-5	45.000004	25
ACCGATC	25	3.8769474E-5	45.000004	10
TTGTACG	20	7.0165604E-4	45.000004	1
TAGCCTT	20	7.0165604E-4	45.000004	38
GCCGATT	25	3.8769474E-5	45.000004	9
CGTAGGG	25	3.8769474E-5	45.000004	3
CGGGCTA	20	7.0165604E-4	45.000004	6
CGGGATT	20	7.0165604E-4	45.000004	6
CAACTAG	20	7.0165604E-4	45.000004	16
AACTAGA	20	7.0165604E-4	45.000004	17
CCCGGGA	25	3.8769474E-5	45.000004	4
GTTATGG	20	7.0165604E-4	45.000004	2
GACCGAT	55	1.8189894E-12	45.0	9
TTTTCCG	35	1.2038981E-7	45.0	1
TCGTTTG	30	2.1547203E-6	44.999996	1