##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933635.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 172143 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.96218841312165 33.0 31.0 34.0 30.0 34.0 2 32.14401979749395 33.0 31.0 34.0 30.0 34.0 3 32.280179850473154 34.0 31.0 34.0 30.0 34.0 4 35.805295597265065 37.0 35.0 37.0 35.0 37.0 5 35.8804075681265 37.0 35.0 37.0 35.0 37.0 6 35.859564431896736 37.0 35.0 37.0 35.0 37.0 7 35.813271524255995 37.0 35.0 37.0 35.0 37.0 8 35.646270832970266 37.0 35.0 37.0 33.0 37.0 9 37.503163067914464 39.0 37.0 39.0 35.0 39.0 10 37.06043812411774 39.0 37.0 39.0 33.0 39.0 11 37.046101206555015 39.0 37.0 39.0 33.0 39.0 12 37.05320576497447 39.0 37.0 39.0 33.0 39.0 13 37.03930453169748 39.0 37.0 39.0 33.0 39.0 14 38.12956088833121 40.0 37.0 41.0 33.0 41.0 15 38.1459948995893 40.0 37.0 41.0 33.0 41.0 16 38.29407527462633 40.0 38.0 41.0 34.0 41.0 17 38.281800596016105 40.0 38.0 41.0 34.0 41.0 18 38.15309945800875 39.0 37.0 41.0 34.0 41.0 19 37.94487141504447 39.0 37.0 41.0 34.0 41.0 20 37.54708004391698 39.0 35.0 41.0 34.0 41.0 21 37.45843281457858 39.0 35.0 41.0 33.0 41.0 22 37.46923778486491 39.0 35.0 41.0 33.0 41.0 23 37.3689142166687 39.0 35.0 40.0 33.0 41.0 24 37.30327692674114 39.0 35.0 41.0 33.0 41.0 25 37.20883800096431 39.0 35.0 41.0 33.0 41.0 26 37.16323637905695 39.0 35.0 40.0 33.0 41.0 27 37.052671325583965 39.0 35.0 40.0 33.0 41.0 28 37.00856845761954 39.0 35.0 40.0 33.0 41.0 29 36.89796854940369 39.0 35.0 40.0 33.0 41.0 30 36.64183847150334 39.0 35.0 40.0 31.0 41.0 31 36.33910179327652 38.0 35.0 40.0 31.0 41.0 32 36.11808786880675 38.0 35.0 40.0 30.0 41.0 33 35.6487106649704 38.0 35.0 40.0 27.0 41.0 34 35.35070842264861 38.0 35.0 40.0 25.0 41.0 35 35.14074345166519 38.0 35.0 40.0 23.0 41.0 36 34.86045322783964 38.0 35.0 40.0 22.0 41.0 37 34.71615459240283 38.0 34.0 40.0 21.0 41.0 38 34.6463521607036 38.0 34.0 40.0 21.0 41.0 39 34.63643017723637 38.0 34.0 40.0 21.0 41.0 40 34.44027930267278 38.0 34.0 40.0 21.0 41.0 41 34.32411425384709 38.0 34.0 40.0 20.0 41.0 42 34.14756336301796 38.0 33.0 40.0 18.0 41.0 43 34.02413690942995 38.0 33.0 40.0 18.0 41.0 44 33.89218266208908 38.0 33.0 40.0 18.0 41.0 45 33.77243338387271 37.0 33.0 40.0 18.0 41.0 46 33.400905061489574 37.0 32.0 40.0 17.0 41.0 47 33.248996473861844 37.0 32.0 40.0 17.0 41.0 48 33.20356912566878 36.0 32.0 40.0 17.0 41.0 49 33.25299315104303 36.0 32.0 40.0 17.0 41.0 50 33.071399940746936 36.0 32.0 40.0 15.0 41.0 51 32.07487960590904 35.0 31.0 39.0 13.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 3.0 9 2.0 10 1.0 11 10.0 12 7.0 13 8.0 14 11.0 15 6.0 16 17.0 17 46.0 18 56.0 19 99.0 20 205.0 21 323.0 22 546.0 23 885.0 24 1378.0 25 2349.0 26 3498.0 27 4088.0 28 4107.0 29 3961.0 30 4079.0 31 4580.0 32 5489.0 33 6861.0 34 10053.0 35 13189.0 36 16712.0 37 21632.0 38 35198.0 39 32726.0 40 17.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.7872815043307 5.784725489854365 39.96619089942664 28.461802106388294 2 34.107689537187106 5.436758973644006 41.83847150334315 18.61707998582574 3 20.694422660230156 5.825389356523355 54.07771445832825 19.402473524918236 4 16.079073793299756 5.794020087950134 54.86717438408765 23.259731734662463 5 14.354925846534567 6.708957088002417 55.67987080508647 23.25624626037655 6 18.506706633438476 7.9526904956925355 59.260614721481566 14.27998814938743 7 68.07596010293767 3.12647043446437 23.68147412325799 5.116095339339967 8 66.69164589904905 3.7910341983118685 23.261474471805418 6.255845430833667 9 61.15555090825651 6.215181564164677 25.82039351004688 6.808874017531935 10 28.417071853052406 24.60686754616801 31.533085864659032 15.44297473612055 11 21.024380892629964 19.78936117065463 37.8133296154941 21.37292832122131 12 19.33392586396194 17.278657860034972 42.98170706912276 20.405709206880328 13 21.359567336458642 18.37483952295475 44.55133232254579 15.714260818040815 14 18.620565460111653 20.268032972586745 43.23091848056558 17.880483086736028 15 14.927124541805359 19.634838477312467 44.904527050185024 20.533509930697154 16 15.523140644696559 19.59766008492939 42.463533225283626 22.41566604509042 17 14.971854795141248 19.689444241125113 41.3812934595075 23.95740750422614 18 16.72446744857473 17.90952870578531 43.32270263676129 22.043301208878667 19 16.558907419993844 21.382803831698066 43.25241223866204 18.80587650964605 20 17.88919677245081 23.53450329086864 40.83930220804796 17.736997728632588 21 16.86795280667817 24.84852709665801 40.818970274713465 17.464549821950357 22 14.768535461796297 22.35525115746792 40.0887634118146 22.787449968921187 23 14.468203760826754 24.200809791859093 38.18104715265797 23.14993929465619 24 15.303555764684013 23.00354937464782 38.71083924411681 22.982055616551357 25 15.669530564704925 25.27491678430142 35.67150566680027 23.384046984193375 26 15.121730189435528 25.097738508100825 37.66171148405686 22.11881981840679 27 16.00355518377163 24.97632782047484 38.95540335651174 20.064713639241795 28 14.077830640804448 24.296660334721714 38.58013395839506 23.045375066078783 29 17.42853325432925 22.59574888319595 37.02270786497272 22.95300999750208 30 21.123716909778498 24.86595446808758 35.708684059183355 18.30164456295057 31 20.426622052595807 30.007029039809925 30.77209064556793 18.79425826202634 32 20.33716154592403 28.77781844164445 29.670680771219278 21.214339241212247 33 20.84371714214345 26.90205236344202 28.633752171160026 23.620478323254503 34 21.088862166919363 26.434998809129617 29.883294702659995 22.592844321291018 35 23.869689734697317 26.189853784353705 27.894831622546373 22.045624858402608 36 22.620728115578327 32.68038781710555 26.419314174843006 18.27956989247312 37 20.39583369640357 34.58519951435725 26.78935536153082 18.22961142770836 38 23.409026216575754 30.96727720557908 26.629604456759786 18.994092121085377 39 23.826121306123397 28.04180245493572 26.789936273911806 21.342139965029077 40 23.806370285169887 29.80951883027483 28.11674015208286 18.267370732472422 41 22.783383582254288 29.323876079770887 26.473339026274665 21.419401311700156 42 24.239150009004142 26.257239620548035 27.44171996537762 22.0618904050702 43 21.300314273598115 24.507531529019477 31.38379138274574 22.808362814636666 44 21.221310189784077 25.40852663192811 30.21790023410769 23.15226294418013 45 23.939399220415584 23.98877677279936 28.29798481495036 23.773839191834696 46 24.44653572901599 25.671679940514576 30.573999523651846 19.307784806817587 47 19.421062721109774 28.177735952086348 33.141051335227104 19.260149991576768 48 19.012681317276915 26.31010264721772 33.748104773357035 20.929111262148332 49 22.427865205091116 22.24081141841376 34.39756481529891 20.933758561196214 50 21.373509233602295 20.67176707737172 32.43466187994864 25.520061809077337 51 19.09865634966278 19.834672336371504 30.568771312222975 30.49790000174274 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 477.0 1 914.5 2 1352.0 3 5443.0 4 9534.0 5 5979.0 6 2424.0 7 2280.5 8 2137.0 9 2115.5 10 2094.0 11 2010.5 12 1927.0 13 1812.5 14 1698.0 15 1581.0 16 1464.0 17 1354.0 18 1244.0 19 1214.5 20 1185.0 21 1119.5 22 1054.0 23 1021.0 24 988.0 25 1058.5 26 1225.5 27 1322.0 28 1517.0 29 1712.0 30 1797.5 31 1883.0 32 2084.0 33 2285.0 34 2646.0 35 3007.0 36 3265.0 37 3523.0 38 3772.5 39 4022.0 40 4744.0 41 5466.0 42 6501.0 43 7536.0 44 8644.5 45 9753.0 46 11940.0 47 14127.0 48 17215.0 49 20303.0 50 20427.0 51 20551.0 52 17814.5 53 15078.0 54 11909.0 55 8740.0 56 7318.5 57 5897.0 58 5172.0 59 4447.0 60 4136.0 61 3825.0 62 3408.5 63 2992.0 64 2607.0 65 2222.0 66 1894.5 67 1567.0 68 1317.0 69 1067.0 70 875.0 71 683.0 72 630.0 73 577.0 74 483.0 75 318.0 76 247.0 77 186.5 78 126.0 79 92.0 80 58.0 81 36.5 82 15.0 83 11.0 84 7.0 85 7.5 86 8.0 87 4.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 172143.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.31920554422777 #Duplication Level Percentage of deduplicated Percentage of total 1 76.06084867894315 43.597474192967475 2 11.984270961072657 13.738577810308872 3 5.197069047643177 8.9367560690821 4 2.666436947025975 6.113521897492201 5 1.3773043751456862 3.947299628796989 6 0.7702364423184117 2.6489604572942262 7 0.46518227240019866 1.8664714801066555 8 0.30100029390601085 1.3802478172217283 9 0.2280305256863719 1.1763475714957914 >10 0.8847584396631228 8.595179589062582 >50 0.04256569812812275 1.6393347391412953 >100 0.01824244205490975 1.9977576782093955 >500 0.0030404070091516254 1.0839825029190846 >1k 0.0 0.0 >5k 0.0010134690030505417 3.2780885659016055 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5643 3.2780885659016055 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCC 713 0.4141905276427157 No Hit CTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGCT 595 0.3456428666864177 Illumina PCR Primer Index 8 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC 558 0.3241491085899514 Illumina PCR Primer Index 8 (95% over 23bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGC 394 0.22887947810831694 No Hit TCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC 378 0.2195848800125477 RNA PCR Primer, Index 40 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCGAAGAAGCTCGTATGCCGTCTTCTGC 364 0.21145210667874964 RNA PCR Primer, Index 40 (95% over 24bp) TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 342 0.19867203429706695 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 205 0.11908703810204306 No Hit TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 201 0.11676338857810077 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.3956013314511772 0.0 2 0.0 0.0 0.0 1.2524470934049017 0.0 3 0.0 0.0 0.0 1.7380898439088432 0.0 4 0.0 0.0 0.0 2.516512434429515 0.0 5 0.0 0.0 0.0 4.223233009765137 0.0 6 0.0 0.0 0.0 5.766136293662827 0.0 7 0.0 0.0 0.0 7.10107294516768 0.0 8 0.0 0.0 0.0 9.19816664052561 0.0 9 0.0 0.0 0.0 10.156091156770824 0.0 10 0.0 0.0 0.0 12.293848718797744 0.0 11 0.0 0.0 0.0 17.233346694318097 0.0 12 0.0 0.0 0.0 21.878903005059747 0.0 13 0.0 0.0 0.0 23.332926694666643 0.0 14 0.0 0.0 0.0 23.872594296602244 0.0 15 0.0 0.0 0.0 24.657406923313758 0.0 16 0.0 0.0 0.0 26.487861835799308 0.0 17 0.0 0.0 0.0 28.586117355919207 0.0 18 0.0 0.0 0.0 30.567609487461006 0.0 19 0.0 0.0 0.0 31.823542055151822 0.0 20 0.0 0.0 0.0 32.94121747616807 0.0 21 0.0 0.0 0.0 34.18204632195326 0.0 22 0.0 0.0 0.0 35.314825464875135 0.0 23 0.0 0.0 0.0 36.154824767780276 0.0 24 0.0 0.0 0.0 36.6369820439983 0.0 25 0.0 0.0 0.0 36.96055024020727 0.0 26 0.0 0.0 0.0 37.184782419267705 0.0 27 0.0 0.0 0.0 37.399720000232364 0.0 28 0.0 0.0 0.0 37.60129659643436 0.0 29 0.0 0.0 0.0 37.833080636447605 0.0 30 0.0 0.0 0.0 38.06835015074676 0.0 31 0.0 0.0 0.0 38.26469853551989 0.0 32 0.0 0.0 0.0 38.51565268410565 0.0 33 0.0 0.0 0.0 38.728266615546374 0.0 34 0.0 0.0 0.0 38.90834945365191 0.0 35 0.0 0.0 0.0 39.07797586889969 0.0 36 0.0 0.0 0.0 39.25980144414818 0.0 37 0.0 0.0 0.0 39.43058968415794 0.0 38 0.0 0.0 0.0 39.63448992988388 0.0 39 0.0 0.0 0.0 39.94527805371116 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTAGATA 20 7.0165604E-4 45.000004 19 GTGCAGG 20 7.0165604E-4 45.000004 2 CCGGGAT 25 3.8769474E-5 45.000004 5 ATAGGTG 25 3.8769474E-5 45.000004 24 TTGCTAG 20 7.0165604E-4 45.000004 1 TAGGTGG 25 3.8769474E-5 45.000004 25 ACCGATC 25 3.8769474E-5 45.000004 10 TTGTACG 20 7.0165604E-4 45.000004 1 TAGCCTT 20 7.0165604E-4 45.000004 38 GCCGATT 25 3.8769474E-5 45.000004 9 CGTAGGG 25 3.8769474E-5 45.000004 3 CGGGCTA 20 7.0165604E-4 45.000004 6 CGGGATT 20 7.0165604E-4 45.000004 6 CAACTAG 20 7.0165604E-4 45.000004 16 AACTAGA 20 7.0165604E-4 45.000004 17 CCCGGGA 25 3.8769474E-5 45.000004 4 GTTATGG 20 7.0165604E-4 45.000004 2 GACCGAT 55 1.8189894E-12 45.0 9 TTTTCCG 35 1.2038981E-7 45.0 1 TCGTTTG 30 2.1547203E-6 44.999996 1 >>END_MODULE