SRR2933630.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933630.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	135449
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6346	4.685158251445194	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCC	1742	1.2860929205826548	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCG	1200	0.8859423103898885	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGC	1079	0.7966097940922413	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC	979	0.7227812682264173	No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT	963	0.7109687040878855	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	962	0.7102304188292272	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGC	872	0.6437847455499855	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	792	0.5847219248573263	No Hit
TCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	661	0.48800655597309683	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACGATT	405	0.29900552975658734	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	383	0.2827632540661061	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT	328	0.24215756483990286	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTC	324	0.2392044238052699	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCG	317	0.2340364269946622	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTA	278	0.2052433019069908	No Hit
TCCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG	255	0.1882627409578513	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	231	0.17054389475005352	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	203	0.1498719075076228	No Hit
CGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG	187	0.13805934336909095	No Hit
GCCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG	176	0.1299382055238503	No Hit
TTCCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	172	0.12698506448921734	No Hit
TGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG	156	0.11517250035068549	No Hit
CGTTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATG	136	0.10040679517752069	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTC	136	0.10040679517752069	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTTTGCG	20	7.011233E-4	45.000004	1
TCGCATT	20	7.011233E-4	45.000004	22
ACACGTG	55	1.8189894E-12	45.000004	42
TTTGTCG	25	3.8725375E-5	45.000004	1
ATGGAAG	20	7.011233E-4	45.000004	40
TATGGAA	20	7.011233E-4	45.000004	39
GGGTAAC	20	7.011233E-4	45.000004	7
TCGGGTA	20	7.011233E-4	45.000004	5
CCTACAC	45	3.8016879E-10	45.000004	28
ATTCGAG	20	7.011233E-4	45.000004	14
GTAGGAT	20	7.011233E-4	45.000004	33
ATTTTGA	20	7.011233E-4	45.000004	26
GGGAATC	25	3.8725375E-5	45.000004	7
CTCGGGT	20	7.011233E-4	45.000004	4
TAATTAT	45	3.8016879E-10	45.000004	40
TTAAGCA	20	7.011233E-4	45.000004	45
CGAGGGC	20	7.011233E-4	45.000004	4
ACGTGAG	55	1.8189894E-12	45.000004	44
TCCCGGG	20	7.011233E-4	45.000004	3
ATTGGGA	45	3.8016879E-10	45.000004	4

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content