SRR2933629.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933629.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	136312
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6364	4.668701214860027	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCC	1706	1.2515405833675686	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGC	1197	0.8781325195140559	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCG	1154	0.8465872410352719	No Hit
GAATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTC	997	0.7314102940313398	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	982	0.7204061271201361	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGC	938	0.6881272375139387	No Hit
CTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGCT	871	0.6389752919772287	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	786	0.5766183461470744	No Hit
TCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTGC	661	0.48491695522037676	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCTGCACGATT	405	0.29711250660250016	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCG	341	0.250161394448031	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	325	0.23842361640941367	No Hit
GAATGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCT	304	0.2230177827337285	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTC	299	0.2193497270966606	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCTGCACGATTCGTA	295	0.2164152825870063	No Hit
TCCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG	258	0.1892716708727038	No Hit
GAACTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	249	0.18266917072598157	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	245	0.17973472621632725	No Hit
CGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG	235	0.17239861494219144	No Hit
GCCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG	168	0.12324666940548154	No Hit
TTCCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCT	168	0.12324666940548154	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTC	151	0.11077528023945069	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	149	0.10930805798462351	No Hit
TGCTGTCTCTTATACACATCTGACGCTGCACGATTCGTATGCCGTCTTCTG	141	0.10343916896531485	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGTA	20	7.011398E-4	45.000004	5
CATGGGA	20	7.011398E-4	45.000004	4
TGGGTCC	20	7.011398E-4	45.000004	6
GGTCCAG	20	7.011398E-4	45.000004	8
GCACGGG	20	7.011398E-4	45.000004	3
TGTATTG	20	7.011398E-4	45.000004	1
GGTCAAG	40	6.7393557E-9	45.000004	15
ACGGGCT	20	7.011398E-4	45.000004	5
CTGAATG	20	7.011398E-4	45.000004	5
TGCATGG	20	7.011398E-4	45.000004	2
TACTGAT	20	7.011398E-4	45.000004	20
GCCCTAC	20	7.011398E-4	45.000004	26
GCGGGAT	20	7.011398E-4	45.000004	5
GTCAAGC	35	1.2014243E-7	45.000004	16
ACATGGG	20	7.011398E-4	45.000004	3
CTGGGTC	35	1.2014243E-7	45.000004	5
CTGGGTA	45	3.8016879E-10	45.000004	5
GTTGGGT	20	7.011398E-4	45.000004	4
TGGTCAA	35	1.2014243E-7	45.000004	14
TTGGGTC	40	6.7393557E-9	45.000004	5

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content