SRR2933626.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933626.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	236678
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7430	3.1392862876988987	No Hit
CTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGCT	1469	0.6206745029111281	No Hit
CCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	1468	0.6202519879329722	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCC	1273	0.537861567192557	No Hit
GCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	1140	0.4816670750978122	No Hit
TCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTGC	1088	0.4596962962337015	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGC	593	0.2505513820464936	No Hit
TCCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTG	440	0.18590659038862928	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	378	0.1597106617429588	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGC	350	0.14788024235459146	No Hit
GCCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTG	339	0.14323257759487573	No Hit
CGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTG	337	0.1423875476385638	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	328	0.13858491283516003	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCG	291	0.12295185864338891	No Hit
TTCCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT	290	0.12252934366523292	No Hit
GTGCCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTC	270	0.11407904410211342	No Hit
GGCCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCT	264	0.11154395423317756	No Hit
TGCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTCTG	254	0.10731880445161782	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCG	248	0.10478371458268196	No Hit
GAATCTGTCTCTTATACACATCTGACGCGAAACCCATCGTATGCCGTCTTC	247	0.10436119960452597	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATGCCA	35	1.2064629E-7	45.000004	9
GGACCGA	55	1.8189894E-12	45.000004	8
TATACTA	35	1.2064629E-7	45.000004	44
GTGCAAG	25	3.88139E-5	45.0	1
CGTGGGT	20	7.0219237E-4	45.0	4
ATGGGAT	20	7.0219237E-4	45.0	5
TCTTGTG	25	3.88139E-5	45.0	1
CCCTACA	40	6.7757355E-9	45.0	27
TTTGTCG	20	7.0219237E-4	45.0	1
TTGCTCG	20	7.0219237E-4	45.0	1
ATTACAA	20	7.0219237E-4	45.0	10
GACCGAT	50	2.1827873E-11	45.0	9
TCGGGAT	40	6.7757355E-9	45.0	5
TTCGTTG	20	7.0219237E-4	45.0	1
GCGTTAG	20	7.0219237E-4	45.0	1
TAGCATA	20	7.0219237E-4	45.0	30
CGTTAGG	20	7.0219237E-4	45.0	2
CGGGATC	20	7.0219237E-4	45.0	6
CGGGAAT	25	3.88139E-5	45.0	6
TTACGGG	20	7.0219237E-4	45.0	3

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content