##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933624.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 104021 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.950087001663125 33.0 31.0 34.0 30.0 34.0 2 32.15923707712866 34.0 31.0 34.0 30.0 34.0 3 32.2350679189779 33.0 31.0 34.0 30.0 34.0 4 35.857884465636744 37.0 35.0 37.0 35.0 37.0 5 35.89270435777391 37.0 35.0 37.0 35.0 37.0 6 35.868055488795534 37.0 35.0 37.0 35.0 37.0 7 35.921736956960615 37.0 35.0 37.0 35.0 37.0 8 35.70973168879361 37.0 35.0 37.0 35.0 37.0 9 37.52789340613914 39.0 37.0 39.0 35.0 39.0 10 37.065842474115804 39.0 37.0 39.0 33.0 39.0 11 37.10994895261534 39.0 37.0 39.0 33.0 39.0 12 37.231193701271856 39.0 37.0 39.0 34.0 39.0 13 37.159265917458974 39.0 37.0 39.0 33.0 39.0 14 38.20859249574605 40.0 38.0 41.0 33.0 41.0 15 38.24616183270686 40.0 37.0 41.0 33.0 41.0 16 38.32680900971919 40.0 38.0 41.0 33.0 41.0 17 38.32775112717624 40.0 38.0 41.0 33.0 41.0 18 37.93344613106969 39.0 37.0 40.0 34.0 41.0 19 37.49506349679392 38.0 37.0 40.0 34.0 41.0 20 36.897203449303504 38.0 35.0 40.0 33.0 41.0 21 36.74022553138309 38.0 35.0 40.0 33.0 41.0 22 36.78099614500918 38.0 35.0 40.0 33.0 41.0 23 36.711298680074215 38.0 35.0 40.0 33.0 41.0 24 36.59141904038608 38.0 35.0 40.0 33.0 41.0 25 36.50152373078513 38.0 35.0 40.0 32.0 41.0 26 36.48858403591583 38.0 35.0 40.0 32.0 41.0 27 36.36434950634968 38.0 35.0 40.0 32.0 41.0 28 36.27765547341402 38.0 35.0 40.0 32.0 41.0 29 36.18676036569539 38.0 35.0 40.0 31.0 41.0 30 36.0017111929322 38.0 35.0 40.0 31.0 41.0 31 35.548523855759896 37.0 35.0 40.0 30.0 41.0 32 35.010324838253815 37.0 35.0 40.0 25.0 41.0 33 34.42029974716644 38.0 34.0 40.0 21.0 41.0 34 33.970429047980694 38.0 34.0 40.0 18.0 41.0 35 33.64532161775026 38.0 34.0 40.0 15.0 41.0 36 33.39686217206141 38.0 33.0 40.0 12.0 41.0 37 33.1674661847127 37.0 33.0 40.0 10.0 41.0 38 33.07969544611184 37.0 33.0 40.0 10.0 41.0 39 32.92370771286567 37.0 33.0 40.0 10.0 41.0 40 32.671268301592946 37.0 32.0 40.0 10.0 41.0 41 32.43811345785947 37.0 31.0 40.0 10.0 41.0 42 32.36133088510974 37.0 31.0 40.0 10.0 41.0 43 32.275232885667315 37.0 31.0 40.0 10.0 41.0 44 32.23327020505475 37.0 31.0 40.0 9.0 41.0 45 32.242143413349226 37.0 31.0 40.0 10.0 41.0 46 31.96356504936503 36.0 30.0 40.0 9.0 41.0 47 31.69999327058959 36.0 30.0 40.0 9.0 41.0 48 31.67371972966997 36.0 30.0 40.0 8.0 41.0 49 31.79523365474279 36.0 30.0 40.0 8.0 41.0 50 31.732755885830745 36.0 30.0 40.0 8.0 41.0 51 30.71484604070332 35.0 27.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 3.0 12 2.0 13 2.0 14 6.0 15 6.0 16 13.0 17 16.0 18 46.0 19 84.0 20 164.0 21 246.0 22 425.0 23 651.0 24 1236.0 25 2114.0 26 3377.0 27 3678.0 28 3314.0 29 3040.0 30 2895.0 31 3078.0 32 3378.0 33 4147.0 34 5824.0 35 8738.0 36 11169.0 37 12892.0 38 20373.0 39 13098.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.69890695148095 5.228751886638275 37.62509493275396 37.44724622912681 2 42.36932927005124 4.811528441372415 36.04656752002 16.77257476855635 3 17.377260360888666 4.955730092961998 60.703127253150804 16.963882292998527 4 13.915459378394749 4.704819219196124 61.19533555724325 20.18438584516588 5 10.998740638909451 6.125686159525481 61.66062621970564 21.21494698185943 6 15.163284336816604 6.7669028369271595 65.73095817190759 12.33885465434864 7 57.11058343988233 2.449505388335048 35.15347862450851 5.286432547274108 8 54.84565616558194 3.2839522788667677 34.8794954864883 6.990896069062978 9 50.20332432874132 4.991299833687428 37.3145807096644 7.490795127906864 10 25.257399948087407 16.86390248122975 42.448159506253546 15.430538064429298 11 15.198854077542034 14.005825746724218 47.26064929196989 23.534670883763855 12 13.736649330423663 11.271762432585728 54.50053354611089 20.491054690879725 13 17.945414868151623 13.404985531767624 55.32056027148364 13.329039328597112 14 15.654531296565116 15.758356485709616 52.989300237452056 15.597811980273214 15 9.664394689533843 14.92775497255362 55.904096288249484 19.50375404966305 16 9.86819969044712 14.61627940512012 52.128897049634205 23.38662385479855 17 10.168139125753454 14.466309687466955 49.79186894953904 25.573682237240558 18 11.08045490814355 13.786639236308055 53.62474884879015 21.50815700675825 19 11.784158967900712 15.624729621903269 54.574557060593534 18.016554349602483 20 11.667836302285115 19.996923698099422 51.30887032426145 17.026369675354015 21 11.220811182357409 21.49181415291143 51.370396362273006 15.916978302458157 22 9.165456975033887 19.771969121619673 48.82091116216918 22.24166274117726 23 9.574028321204372 20.30551523250113 46.39543938243239 23.725017063862104 24 11.638034627623268 19.111525557339384 45.82151680910586 23.428923005931495 25 9.97106353524769 21.52449986060507 43.65464665788639 24.84978994626085 26 9.316388037030984 21.883081300891167 46.07723440459138 22.72329625748647 27 11.400582574672422 20.86501764066871 49.194874111958164 18.539525672700705 28 9.279856951961623 16.94657809480778 50.07738821968641 23.69617673354419 29 12.898357062516222 15.10271964314898 46.92994683765778 25.068976456677017 30 18.51453071975851 16.591842031897404 46.185866315455534 18.70776093288855 31 16.324588304284713 22.159948471943167 41.54737985599062 19.968083367781507 32 15.170013747224118 22.00901740994607 38.31726286038396 24.503705982445855 33 19.104796146931868 17.754107343709443 38.84023418348218 24.300862325876505 34 18.12807029349843 15.181549879351286 39.73140039030581 26.958979436844484 35 16.835062150911835 15.306524644062256 36.3455456109824 31.51286759404351 36 16.574537833706653 18.554907182203593 41.69446554061199 23.17608944347776 37 16.19769085088588 18.221320694859692 47.17701233404794 18.403976120206497 38 22.783860951154093 18.822160909816287 38.63066111650532 19.763317022524298 39 28.649022793474394 17.445515809307736 35.16309206794782 18.74236932927005 40 23.686563290104885 15.238269195643186 39.349746685765375 21.725420828486556 41 15.585314503802117 18.21747531748397 38.0826948404649 28.114515338249007 42 15.462262427779006 21.831168706318916 37.82313186760366 24.883436998298418 43 17.686813239634304 20.37761605829592 41.546418511646685 20.389152190423086 44 19.931552282712143 15.850645542726948 39.84195498985782 24.37584718470309 45 24.451793387873604 12.678209207756124 37.43090337527999 25.43909402909028 46 24.488324472942963 14.075042539487221 41.648321012103324 19.788311975466492 47 15.78335143865181 19.771969121619673 44.61406831312908 19.830611126599436 48 15.488218725065131 19.87579431076417 43.93439786197018 20.70158910220052 49 20.962113419405696 14.73933148114323 44.48332548235452 19.81522961709655 50 20.630449620749655 12.153315195970045 40.170734755482066 27.045500427798235 51 17.22536795454764 12.451331942588515 36.895434575710674 33.42786552715317 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 206.0 1 381.0 2 556.0 3 5564.5 4 10573.0 5 6448.5 6 2324.0 7 2196.5 8 2069.0 9 2014.0 10 1959.0 11 1835.5 12 1712.0 13 1624.5 14 1537.0 15 1413.5 16 1290.0 17 1172.5 18 1055.0 19 921.0 20 787.0 21 729.0 22 671.0 23 677.5 24 684.0 25 628.0 26 562.5 27 553.0 28 522.5 29 492.0 30 489.5 31 487.0 32 501.0 33 515.0 34 565.5 35 616.0 36 803.5 37 991.0 38 1157.0 39 1323.0 40 1796.0 41 2269.0 42 3062.0 43 3855.0 44 4712.5 45 5570.0 46 7634.5 47 9699.0 48 12237.5 49 14776.0 50 14507.0 51 14238.0 52 11601.5 53 8965.0 54 6621.5 55 4278.0 56 3293.5 57 2309.0 58 1920.5 59 1532.0 60 1431.0 61 1330.0 62 1267.0 63 1204.0 64 1117.5 65 1031.0 66 889.5 67 748.0 68 603.5 69 459.0 70 379.0 71 299.0 72 255.5 73 212.0 74 173.5 75 104.5 76 74.0 77 53.0 78 32.0 79 26.5 80 21.0 81 14.5 82 8.0 83 5.5 84 3.0 85 2.0 86 1.0 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 104021.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.47437536651253 #Duplication Level Percentage of deduplicated Percentage of total 1 78.58937700372584 43.59696599725055 2 11.267654449354476 12.501321848472905 3 4.311584784680703 7.175474183097644 4 2.141928775669353 4.752886436392652 5 1.119487046183173 3.1051422308956846 6 0.5857378043497097 1.9496063294911603 7 0.3864483147040984 1.5006585208755925 8 0.29806775842647953 1.3228098172484402 9 0.19755653756173644 0.9863392968727468 >10 1.0068451607313058 10.063352592265023 >50 0.06585217918724548 2.4197037136732007 >100 0.024261329174248333 2.7311792811066997 >500 0.0034659041677497617 1.1632266561559685 >1k 0.0 0.0 >5k 0.0017329520838748808 6.731333096201729 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 7002 6.731333096201729 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCC 697 0.6700570077195951 No Hit CCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC 513 0.4931696484363734 No Hit CTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGCT 470 0.4518318416473596 No Hit TCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC 415 0.39895790273117926 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGC 387 0.3720402611011238 No Hit GCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTGC 332 0.3191663221849434 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCG 149 0.14324030724565232 No Hit TCCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTG 147 0.1413176185577912 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 134 0.12882014208669404 No Hit GCCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTG 129 0.12401342036704127 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 126 0.12112938733524962 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 118 0.11343863258380518 No Hit GGCCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCT 118 0.11343863258380518 No Hit TTCCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCT 107 0.10286384480056912 No Hit CGCTGTCTCTTATACACATCTGACGCCTTGGTCATCGTATGCCGTCTTCTG 106 0.10190250045663857 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.48259486065313734 0.0 2 0.0 0.0 0.0 1.8611626498495497 0.0 3 0.0 0.0 0.0 2.653310389248325 0.0 4 0.0 0.0 0.0 3.752126974360946 0.0 5 0.0 0.0 0.0 6.340065948221993 0.0 6 0.0 0.0 0.0 8.231991617077322 0.0 7 0.0 0.0 0.0 10.168139125753454 0.0 8 0.0 0.0 0.0 12.850289845319695 0.0 9 0.0 0.0 0.0 13.951990463464108 0.0 10 0.0 0.0 0.0 16.82544870747253 0.0 11 0.0 0.0 0.0 24.01149767835341 0.0 12 0.0 0.0 0.0 30.680343392199653 0.0 13 0.0 0.0 0.0 32.74146566558676 0.0 14 0.0 0.0 0.0 33.48746887647687 0.0 15 0.0 0.0 0.0 34.48630564982071 0.0 16 0.0 0.0 0.0 36.95407658069044 0.0 17 0.0 0.0 0.0 39.985195297103466 0.0 18 0.0 0.0 0.0 42.825967833418254 0.0 19 0.0 0.0 0.0 44.51601119004816 0.0 20 0.0 0.0 0.0 46.00705626748445 0.0 21 0.0 0.0 0.0 47.50194672229646 0.0 22 0.0 0.0 0.0 48.79110948750733 0.0 23 0.0 0.0 0.0 49.83512944501591 0.0 24 0.0 0.0 0.0 50.36194614548985 0.0 25 0.0 0.0 0.0 50.68880322242624 0.0 26 0.0 0.0 0.0 50.93106199709674 0.0 27 0.0 0.0 0.0 51.167552705703656 0.0 28 0.0 0.0 0.0 51.377125772680515 0.0 29 0.0 0.0 0.0 51.5559358206516 0.0 30 0.0 0.0 0.0 51.73859124599841 0.0 31 0.0 0.0 0.0 51.88567693061978 0.0 32 0.0 0.0 0.0 52.02699454917757 0.0 33 0.0 0.0 0.0 52.16927351207929 0.0 34 0.0 0.0 0.0 52.30290037588564 0.0 35 0.0 0.0 0.0 52.42595245190875 0.0 36 0.0 0.0 0.0 52.54515915055614 0.0 37 0.0 0.0 0.0 52.662443160515664 0.0 38 0.0 0.0 0.0 52.797992713009876 0.0 39 0.0 0.0 0.0 52.94603974197518 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGAGACA 30 2.1464439E-6 45.000004 8 GGCCGAT 35 1.1977318E-7 45.000004 8 GGGAGAC 35 1.1977318E-7 45.000004 7 GCATGGG 30 2.1464439E-6 45.000004 3 GTGCTTG 35 1.1977318E-7 45.000004 1 GGGCCGA 35 1.1977318E-7 45.000004 7 CTCTGCG 20 7.003698E-4 45.0 1 TTGCATG 20 7.003698E-4 45.0 1 AGCTTGG 20 7.003698E-4 45.0 2 CTGGGTG 25 3.8663013E-5 45.0 5 GGACCGA 20 7.003698E-4 45.0 8 TATGTGG 20 7.003698E-4 45.0 2 AGGGCGA 20 7.003698E-4 45.0 6 AACCCGG 25 3.8663013E-5 45.0 39 AGGGATG 40 6.712071E-9 45.0 6 AGGGAAT 20 7.003698E-4 45.0 6 CGGCGTT 25 3.8663013E-5 45.0 43 TAACCCG 25 3.8663013E-5 45.0 38 GACCGAT 20 7.003698E-4 45.0 9 TCTTGGA 25 3.8663013E-5 45.0 3 >>END_MODULE