SRR2933622.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933622.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	485375
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10924	2.2506309554468196	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCC	1383	0.28493432912696365	No Hit
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	895	0.184393510172547	No Hit
CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	850	0.17512232809683234	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC	687	0.14154004635591036	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	604	0.12443986608292558	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	552	0.11372650012876641	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	516	0.10630955446819469	No Hit
TCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	500	0.10301313417460728	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTACGAA	65	0.0	45.000004	11
CGGGTAT	20	7.0292543E-4	45.0	6
GAATCGC	20	7.0292543E-4	45.0	17
GTCCGAC	20	7.0292543E-4	45.0	25
GCGATAT	20	7.0292543E-4	45.0	9
CCGACGG	20	7.0292543E-4	45.0	27
TTACGGG	35	1.2099918E-7	45.0	3
CCGGTAT	20	7.0292543E-4	45.0	42
CGGTCCG	20	7.0292543E-4	45.0	23
TATCGGG	20	7.0292543E-4	45.0	3
AATCGCG	20	7.0292543E-4	45.0	18
CGTTTTT	4640	0.0	43.3028	1
TCGTTTG	95	0.0	42.63158	1
AACACGT	270	0.0	42.5	41
CGAGACA	360	0.0	41.875004	22
CGACCAA	355	0.0	41.830986	29
GCGAGAC	365	0.0	41.30137	21
ACACGAC	360	0.0	41.250004	26
GACACGA	360	0.0	41.250004	25
CGAATAT	60	3.6379788E-12	41.250004	14