##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933622.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 485375 Sequences flagged as poor quality 0 Sequence length 51 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.17459490084986 33.0 31.0 34.0 30.0 34.0 2 32.32044707700232 34.0 31.0 34.0 30.0 34.0 3 32.47025495750708 34.0 31.0 34.0 31.0 34.0 4 35.98568323461242 37.0 35.0 37.0 35.0 37.0 5 35.98647025495751 37.0 35.0 37.0 35.0 37.0 6 35.93801699716714 37.0 35.0 37.0 35.0 37.0 7 35.99423538501159 37.0 35.0 37.0 35.0 37.0 8 35.82229822302344 37.0 35.0 37.0 35.0 37.0 9 37.653937677053825 39.0 38.0 39.0 35.0 39.0 10 37.13588462528973 39.0 37.0 39.0 33.0 39.0 11 37.11446613443214 39.0 37.0 39.0 34.0 39.0 12 37.0179098635076 39.0 37.0 39.0 33.0 39.0 13 36.95734638166366 39.0 37.0 39.0 33.0 39.0 14 37.92298532062838 40.0 37.0 41.0 33.0 41.0 15 38.041466907030646 40.0 37.0 41.0 33.0 41.0 16 38.14052639711563 40.0 37.0 41.0 33.0 41.0 17 38.1195755858872 40.0 37.0 41.0 33.0 41.0 18 37.96378882307494 39.0 37.0 41.0 33.0 41.0 19 37.791361318568114 39.0 37.0 41.0 33.0 41.0 20 37.51547978367242 39.0 35.0 41.0 33.0 41.0 21 37.392024723152204 39.0 35.0 41.0 33.0 41.0 22 37.428627349987124 39.0 35.0 41.0 33.0 41.0 23 37.371867113056915 39.0 35.0 41.0 33.0 41.0 24 37.29356889003348 39.0 35.0 41.0 33.0 41.0 25 37.19608756116405 39.0 35.0 41.0 33.0 41.0 26 37.10327478753541 39.0 35.0 40.0 33.0 41.0 27 37.02437908833376 39.0 35.0 40.0 33.0 41.0 28 36.868435745557555 39.0 35.0 40.0 32.0 41.0 29 36.769745042492914 39.0 35.0 40.0 32.0 41.0 30 36.66414627865053 39.0 35.0 40.0 31.0 41.0 31 36.4267834148854 38.0 35.0 40.0 31.0 41.0 32 36.14474375482874 38.0 35.0 40.0 30.0 41.0 33 35.90915889775946 38.0 35.0 40.0 29.0 41.0 34 35.653993304146276 38.0 35.0 40.0 27.0 41.0 35 35.41774298223024 38.0 35.0 40.0 25.0 41.0 36 35.24854184908576 38.0 35.0 40.0 25.0 41.0 37 35.08099304661344 38.0 34.0 40.0 24.0 41.0 38 35.024568632500646 38.0 34.0 40.0 24.0 41.0 39 35.00923203708473 38.0 34.0 40.0 24.0 41.0 40 34.93035075972186 38.0 34.0 40.0 23.0 41.0 41 34.74307288179243 38.0 34.0 40.0 23.0 41.0 42 34.513180530517644 38.0 34.0 40.0 23.0 41.0 43 34.3644810713366 37.0 34.0 40.0 22.0 41.0 44 34.284394540303886 37.0 34.0 40.0 21.0 41.0 45 34.348021632758176 37.0 34.0 40.0 22.0 41.0 46 34.21623899047128 37.0 33.0 40.0 22.0 41.0 47 34.03660674736029 37.0 33.0 40.0 21.0 41.0 48 33.95731547772341 37.0 33.0 40.0 21.0 41.0 49 33.98995003862993 37.0 33.0 40.0 21.0 41.0 50 33.9366489827453 37.0 33.0 40.0 20.0 41.0 51 32.847925830543396 35.0 31.0 39.0 18.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 1.0 9 2.0 10 3.0 11 9.0 12 3.0 13 11.0 14 14.0 15 27.0 16 58.0 17 78.0 18 141.0 19 275.0 20 496.0 21 753.0 22 1292.0 23 2104.0 24 3432.0 25 5734.0 26 8364.0 27 9693.0 28 9489.0 29 9561.0 30 10341.0 31 12036.0 32 15089.0 33 20872.0 34 33426.0 35 37370.0 36 46810.0 37 64734.0 38 101960.0 39 91177.0 40 19.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.246046870976052 5.38490857584342 39.14293072366727 26.226113829513263 2 32.261241308266804 5.206077774916302 45.11336595415916 17.41931496265774 3 22.67834148853979 5.189389647180016 53.013855266546486 19.11841359773371 4 17.78872006180788 5.742776203966005 53.70095287149111 22.767550862734996 5 16.386299253154775 6.713984032964203 53.25552407932012 23.644192634560905 6 20.323255215039918 7.661704867370591 56.54452742724697 15.47051249034252 7 73.72876641771826 3.0454802987380893 18.60211176925058 4.623641514293072 8 73.29611125418491 3.5702292042235384 17.83013134174607 5.30352819984548 9 67.39654906000516 5.781921194952357 20.555446819469484 6.26608292557301 10 34.33963430337368 22.389286634045842 26.94081895441669 16.33026010816379 11 26.26052021632758 20.741076487252126 32.35683749678084 20.641565799639455 12 22.501983002832862 19.257069276332732 37.78707185166109 20.45387586917332 13 23.844656193664694 19.156116404841615 39.72062838011847 17.278599021375225 14 20.151223280968324 20.431212979654905 40.866340458408445 18.551223280968323 15 18.170074684522277 19.136131856811744 41.87813546227144 20.815657996394542 16 20.148132886943085 19.538089106361063 38.5431882565027 21.77058975019315 17 19.785938707185167 19.87411795003863 37.34617563739377 22.993767705382435 18 21.37398918362091 18.060468709760492 39.028998197270155 21.536543909348442 19 20.766623744527426 21.559824877671904 37.476178212722125 20.197373165078545 20 21.244398660829255 24.803502446561936 35.34957507082153 18.60252382178728 21 20.357455575585888 25.277980942570178 36.182333247489055 18.18223023435488 22 18.69379345866598 22.312644862219933 36.08611898016997 22.907442698944116 23 17.923049188771568 23.911408704609837 35.20432655163533 22.961215554983262 24 18.411537471027557 24.21488539788823 35.06649497810971 22.307082152974505 25 19.541797579191346 25.580427504506826 31.91429307236673 22.963481843935103 26 18.31367499356168 25.184857069276333 33.56250321916045 22.938964718001547 27 19.224311099665208 23.410558846252897 35.29477208344064 22.070357970641258 28 17.03363378830801 24.566984290497036 34.38042750450682 24.018954416688125 29 19.144372907545712 24.234663919649755 33.098120010301315 23.522843162503218 30 24.360751995879472 23.345042492917848 32.546999742467165 19.747205768735515 31 23.455884625289723 27.15302601081638 29.0762812258563 20.3148081380376 32 22.333247489054855 26.750038629925317 28.861395827968067 22.055318053051764 33 25.03239763069791 23.759361318568118 28.537934586659798 22.67030646407417 34 23.653463816636624 24.887767190316765 29.799845480298735 21.658923512747876 35 23.560751995879475 26.830388874581505 28.919083183105847 20.68977594643317 36 27.29642029358743 28.12361576100953 26.928457378315734 17.651506567087303 37 25.630079835178986 27.858253927375742 28.328199845480302 18.183466391964977 38 24.766829770795777 25.892351274787533 30.34787535410765 18.99294360030904 39 26.353644089621426 22.398969868658252 30.274942055112025 20.97244398660829 40 30.380633530775174 22.29204223538501 28.552150399175897 18.77517383466392 41 27.412825135204738 23.742879217100178 27.87638423899047 20.96791140870461 42 25.285397888230747 24.221272212207058 31.448467679629154 19.04486221993304 43 22.440175122328096 22.551841359773373 34.71789853206283 20.290084985835694 44 23.277465876899306 23.225135204738603 31.36461498841102 22.13278392995107 45 25.595879474633016 21.564769508112285 29.04393510172547 23.79541591552923 46 26.444501673963433 22.30852433685295 30.289569920164823 20.9574040690188 47 22.54998712335823 25.1269636878702 32.94380633530775 19.379242853463815 48 21.87525109451455 24.44934329126964 33.79696111254185 19.878444501673965 49 24.528457378315736 21.580633530775174 33.0235385011589 20.86737058975019 50 22.95833118722637 20.973886170486736 31.63842389904713 24.429358743239764 51 22.05160958022148 20.07128508884883 30.138964718001542 27.73814061292815 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 679.0 1 1350.0 2 2021.0 3 9954.0 4 17887.0 5 11231.5 6 4576.0 7 4469.0 8 4362.0 9 4360.0 10 4358.0 11 4195.5 12 4033.0 13 3967.0 14 3901.0 15 3668.0 16 3435.0 17 3288.0 18 3141.0 19 2926.5 20 2712.0 21 2740.0 22 2768.0 23 2768.0 24 2768.0 25 3022.5 26 3418.5 27 3560.0 28 3789.5 29 4019.0 30 4514.5 31 5010.0 32 5830.0 33 6650.0 34 7656.0 35 8662.0 36 9072.0 37 9482.0 38 10190.0 39 10898.0 40 12588.5 41 14279.0 42 16516.0 43 18753.0 44 21802.5 45 24852.0 46 31397.5 47 37943.0 48 44654.5 49 51366.0 50 53434.0 51 55502.0 52 49390.0 53 43278.0 54 36725.0 55 30172.0 56 26563.0 57 22954.0 58 20767.0 59 18580.0 60 16939.5 61 15299.0 62 13832.5 63 12366.0 64 10979.5 65 9593.0 66 8241.0 67 6889.0 68 5951.0 69 5013.0 70 4118.5 71 3224.0 72 2870.0 73 2516.0 74 2261.5 75 1667.0 76 1327.0 77 1005.5 78 684.0 79 527.5 80 371.0 81 257.5 82 144.0 83 88.0 84 32.0 85 27.0 86 22.0 87 13.5 88 5.0 89 4.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 485375.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 42.12233325664121 #Duplication Level Percentage of deduplicated Percentage of total 1 71.29194006620739 30.029828579812794 2 10.207717226401277 8.599457336000638 3 4.912100713556582 6.207274297398464 4 3.1155304515797417 5.2493364781062315 5 2.229667760806543 4.695940423614109 6 1.6278210011350775 4.114057121518265 7 1.2523529466053416 3.6926419720292767 8 1.0041874755372517 3.383897559738029 9 0.7917849202773979 3.001664545155689 >10 3.4423475804563632 22.700553356890154 >50 0.08581190965162838 2.5116291386094494 >100 0.03481511762986907 2.424052596264795 >500 0.0029421226166086536 0.8476748342766462 >1k 4.903537694347757E-4 0.28565650482568267 >5k 0.0 0.0 >10k+ 4.903537694347757E-4 2.2563352557597667 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10924 2.2506309554468196 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCC 1383 0.28493432912696365 No Hit CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 895 0.184393510172547 No Hit CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT 850 0.17512232809683234 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC 687 0.14154004635591036 No Hit GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 604 0.12443986608292558 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 552 0.11372650012876641 No Hit GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT 516 0.10630955446819469 No Hit TCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC 500 0.10301313417460728 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.0602626834921454E-4 0.0 0.0 0.1913984032964203 0.0 2 2.0602626834921454E-4 0.0 0.0 0.6582539273757404 0.0 3 2.0602626834921454E-4 0.0 0.0 0.9646149884110224 0.0 4 2.0602626834921454E-4 0.0 0.0 1.453927375740407 0.0 5 2.0602626834921454E-4 0.0 0.0 2.685552407932011 0.0 6 2.0602626834921454E-4 0.0 0.0 4.208498583569405 0.0 7 2.0602626834921454E-4 0.0 0.0 5.504197785217615 0.0 8 2.0602626834921454E-4 0.0 0.0 7.3600824105073395 0.0 9 2.0602626834921454E-4 0.0 0.0 8.464177182590781 0.0 10 4.1205253669842907E-4 0.0 0.0 10.434406386814318 0.0 11 4.1205253669842907E-4 0.0 0.0 14.203656966263198 0.0 12 4.1205253669842907E-4 0.0 0.0 17.349266031419006 0.0 13 4.1205253669842907E-4 0.0 0.0 18.55534380633531 0.0 14 4.1205253669842907E-4 0.0 0.0 19.100489312387328 0.0 15 4.1205253669842907E-4 0.0 0.0 19.69384496523307 0.0 16 4.1205253669842907E-4 0.0 0.0 20.97285603914499 0.0 17 6.180788050476436E-4 0.0 0.0 22.495390162245688 0.0 18 6.180788050476436E-4 0.0 0.0 23.929951068761266 0.0 19 6.180788050476436E-4 0.0 0.0 24.787844450167395 0.0 20 6.180788050476436E-4 0.0 0.0 25.561679114087045 0.0 21 6.180788050476436E-4 0.0 0.0 26.432758176667527 0.0 22 6.180788050476436E-4 0.0 0.0 27.199381921194952 0.0 23 6.180788050476436E-4 0.0 0.0 27.777491630182848 0.0 24 6.180788050476436E-4 0.0 0.0 28.16502704094772 0.0 25 6.180788050476436E-4 0.0 0.0 28.445222765902653 0.0 26 6.180788050476436E-4 0.0 0.0 28.69472057687355 0.0 27 6.180788050476436E-4 0.0 0.0 28.953901622456865 0.0 28 8.241050733968581E-4 0.0 0.0 29.189595673448366 0.0 29 8.241050733968581E-4 0.0 0.0 29.43167653875869 0.0 30 8.241050733968581E-4 0.0 0.0 29.735565284573784 0.0 31 8.241050733968581E-4 0.0 0.0 29.979088333762554 0.0 32 8.241050733968581E-4 0.0 0.0 30.406592840587177 0.0 33 8.241050733968581E-4 0.0 0.0 30.640844707700232 0.0 34 8.241050733968581E-4 0.0 0.0 30.905176409992276 0.0 35 8.241050733968581E-4 0.0 0.0 31.187432397630698 0.0 36 8.241050733968581E-4 0.0 0.0 31.4361061035282 0.0 37 8.241050733968581E-4 0.0 0.0 31.652845737831573 0.0 38 8.241050733968581E-4 0.0 0.0 31.982075714653618 0.0 39 8.241050733968581E-4 0.0 0.0 32.63888745815091 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTACGAA 65 0.0 45.000004 11 CGGGTAT 20 7.0292543E-4 45.0 6 GAATCGC 20 7.0292543E-4 45.0 17 GTCCGAC 20 7.0292543E-4 45.0 25 GCGATAT 20 7.0292543E-4 45.0 9 CCGACGG 20 7.0292543E-4 45.0 27 TTACGGG 35 1.2099918E-7 45.0 3 CCGGTAT 20 7.0292543E-4 45.0 42 CGGTCCG 20 7.0292543E-4 45.0 23 TATCGGG 20 7.0292543E-4 45.0 3 AATCGCG 20 7.0292543E-4 45.0 18 CGTTTTT 4640 0.0 43.3028 1 TCGTTTG 95 0.0 42.63158 1 AACACGT 270 0.0 42.5 41 CGAGACA 360 0.0 41.875004 22 CGACCAA 355 0.0 41.830986 29 GCGAGAC 365 0.0 41.30137 21 ACACGAC 360 0.0 41.250004 26 GACACGA 360 0.0 41.250004 25 CGAATAT 60 3.6379788E-12 41.250004 14 >>END_MODULE