SRR2933621.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933621.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	490641
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10896	2.2207683418222284	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCC	1394	0.28411812302681594	No Hit
CTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGCT	854	0.17405801798056011	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	757	0.15428796207410306	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGC	698	0.14226287652275288	No Hit
GCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	567	0.1155631102985686	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	517	0.1053723598313227	No Hit
TCTGTCTCTTATACACATCTGACGCAGATGGGTTCGTATGCCGTCTTCTGC	510	0.10394565476590828	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	505	0.10292657971918368	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCGG	20	7.02933E-4	45.0	2
TACTCGA	20	7.02933E-4	45.0	44
CGTTTCG	20	7.02933E-4	45.0	1
ACGAACG	20	7.02933E-4	45.0	21
CGTTTTT	4815	0.0	43.551403	1
GGCGATA	55	6.002665E-11	40.909092	8
GCGCGAC	45	1.9244908E-8	40.0	9
GCTTGCG	90	0.0	40.0	1
GTACGGG	45	1.9244908E-8	40.0	3
AACACGT	255	0.0	39.705883	41
GACCGAT	210	0.0	39.642857	9
GGACCGA	210	0.0	39.642857	8
ACGTGAG	250	0.0	39.600002	44
CGTGGCA	40	3.452824E-7	39.375	15
TCAGACG	40	3.452824E-7	39.375	22
GCGATTC	150	0.0	39.000004	9
CTTGTTG	225	0.0	39.0	1
TGTACGG	35	6.2409727E-6	38.571426	2
CACGACC	365	0.0	38.219177	27
ACACGTG	265	0.0	38.207546	42