SRR2933620.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933620.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	87324
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2289	2.621272502404837	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTC	176	0.2015482570656406	RNA PCR Primer, Index 21 (95% over 23bp)
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCG	148	0.1694837616233796	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCC	133	0.15230635335073978	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGC	120	0.1374192661811186	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTTGTTG	25	3.8611615E-5	45.000004	1
TATTGGG	25	3.8611615E-5	45.000004	3
ATCCTAG	20	6.997487E-4	45.0	14
TGGGTAC	20	6.997487E-4	45.0	6
GCCCTAG	20	6.997487E-4	45.0	20
GGAACTA	20	6.997487E-4	45.0	8
TTCGGGT	20	6.997487E-4	45.0	4
GACTAAT	20	6.997487E-4	45.0	9
CGTTTTT	1355	0.0	43.67159	1
TGGGACA	55	6.002665E-11	40.90909	6
AGCGGGG	35	6.1822175E-6	38.571426	4
GTTTTTT	1590	0.0	38.490566	2
CGGGTGA	30	1.1313037E-4	37.500004	6
GGAATGA	60	1.5097612E-10	37.500004	8
CCGGGTG	30	1.1313037E-4	37.500004	5
GGGACTA	30	1.1313037E-4	37.500004	7
GGGACCG	60	1.5097612E-10	37.500004	7
TGTCTTG	30	1.1313037E-4	37.500004	1
GCGATTC	30	1.1313037E-4	37.500004	9
GGATTAA	30	1.1313037E-4	37.500004	8