SRR2933619.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933619.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	88293
Sequences flagged as poor quality	0
Sequence length	51
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2228	2.523416352372215	No Hit
GAATCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTC	161	0.1823474114595721	RNA PCR Primer, Index 21 (95% over 23bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCC	159	0.18008222622404946	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCG	156	0.17668444837076552	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGC	117	0.13251333627807416	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGC	96	0.10872889130508648	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATCCTAG	30	2.1427204E-6	45.000004	14
ATACTAT	30	2.1427204E-6	45.000004	45
GCCCTAC	30	2.1427204E-6	45.000004	26
ACTAATC	30	2.1427204E-6	45.000004	10
CTAATCC	30	2.1427204E-6	45.000004	11
TAATCCT	30	2.1427204E-6	45.000004	12
CACATCC	20	6.997903E-4	45.0	45
TGCGGGC	25	3.861507E-5	45.0	4
TGTTGCG	20	6.997903E-4	45.0	1
AACATGG	55	1.8189894E-12	45.0	10
GGAAATA	20	6.997903E-4	45.0	8
CTTTCGG	25	3.861507E-5	45.0	2
AGGGCGA	20	6.997903E-4	45.0	6
CGTTTTT	1360	0.0	43.676468	1
TCAAGCG	55	6.002665E-11	40.909092	17
AGTTGGG	50	1.0568328E-9	40.5	3
GGCGATC	50	1.0568328E-9	40.5	8
TTTGGGC	245	0.0	40.408165	4
GTCTTTG	45	1.8939318E-8	40.0	1
GCGATGT	40	3.4100958E-7	39.375	9