##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933619.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 88293 Sequences flagged as poor quality 0 Sequence length 51 %GC 43 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.255558198271665 33.0 31.0 34.0 30.0 34.0 2 32.424824164996096 34.0 31.0 34.0 31.0 34.0 3 32.53468564891894 34.0 31.0 34.0 31.0 34.0 4 36.01351182992989 37.0 35.0 37.0 35.0 37.0 5 36.00505136307522 37.0 35.0 37.0 35.0 37.0 6 35.96440261402376 37.0 35.0 37.0 35.0 37.0 7 35.93411708742482 37.0 35.0 37.0 35.0 37.0 8 35.7973791806825 37.0 35.0 37.0 35.0 37.0 9 37.631465688106644 39.0 38.0 39.0 35.0 39.0 10 37.20258684153897 39.0 37.0 39.0 34.0 39.0 11 37.10961231354694 39.0 37.0 39.0 34.0 39.0 12 37.01762314113237 39.0 37.0 39.0 33.0 39.0 13 36.97470920684539 39.0 37.0 39.0 33.0 39.0 14 38.146897262523645 40.0 38.0 41.0 33.0 41.0 15 38.217242590012795 40.0 38.0 41.0 33.0 41.0 16 38.307295029051 40.0 38.0 41.0 33.0 41.0 17 38.291653924999714 40.0 38.0 41.0 33.0 41.0 18 38.08167125366677 39.0 37.0 41.0 34.0 41.0 19 37.846137292877124 39.0 37.0 41.0 34.0 41.0 20 37.44431608394776 39.0 35.0 41.0 33.0 41.0 21 37.36981414155142 39.0 35.0 41.0 33.0 41.0 22 37.342144903899516 39.0 35.0 41.0 33.0 41.0 23 37.185699885608145 39.0 35.0 41.0 33.0 41.0 24 37.0846386463253 39.0 35.0 41.0 33.0 41.0 25 37.001211874101 39.0 35.0 41.0 33.0 41.0 26 36.94443500617263 39.0 35.0 41.0 33.0 41.0 27 36.836782077854416 38.0 35.0 41.0 33.0 41.0 28 36.74060231275413 38.0 35.0 40.0 32.0 41.0 29 36.56119964210073 38.0 35.0 40.0 31.0 41.0 30 36.30834834018552 38.0 35.0 40.0 31.0 41.0 31 36.02375046719445 38.0 35.0 40.0 30.0 41.0 32 35.686328474511 38.0 35.0 40.0 28.0 41.0 33 35.1878971152866 38.0 35.0 40.0 24.0 41.0 34 34.743739594305325 38.0 34.0 41.0 21.0 41.0 35 34.470071240075654 38.0 34.0 41.0 18.0 41.0 36 34.27536724315631 38.0 34.0 40.0 18.0 41.0 37 34.15607126272751 38.0 34.0 40.0 18.0 41.0 38 34.02658194873886 38.0 34.0 40.0 16.0 41.0 39 33.947402398831166 38.0 34.0 40.0 15.0 41.0 40 33.770831209722175 38.0 33.0 40.0 15.0 41.0 41 33.61873534708301 38.0 33.0 40.0 15.0 41.0 42 33.44365918022946 37.0 33.0 40.0 14.0 41.0 43 33.35640424495713 37.0 33.0 40.0 12.0 41.0 44 33.21360696770979 37.0 33.0 40.0 12.0 41.0 45 33.15276409228365 37.0 33.0 40.0 12.0 41.0 46 33.00029447408062 36.0 32.0 40.0 12.0 41.0 47 32.94758361365 36.0 32.0 40.0 12.0 41.0 48 32.833372974074955 36.0 32.0 40.0 11.0 41.0 49 32.787457669350914 36.0 32.0 40.0 12.0 41.0 50 32.61796518410293 36.0 32.0 40.0 10.0 41.0 51 31.76007157985344 35.0 30.0 39.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 3.0 11 1.0 12 7.0 13 4.0 14 3.0 15 6.0 16 7.0 17 30.0 18 56.0 19 89.0 20 166.0 21 237.0 22 299.0 23 554.0 24 860.0 25 1486.0 26 2267.0 27 2639.0 28 2498.0 29 2258.0 30 2179.0 31 2266.0 32 2565.0 33 3432.0 34 5515.0 35 6123.0 36 7365.0 37 9954.0 38 16281.0 39 19136.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 27.644320614318236 4.4895971368058625 37.620196391559915 30.24588585731598 2 36.478543032856514 5.8271890183819774 41.58993351681334 16.10433443194817 3 20.79666564733331 6.127326062088727 56.055406430860884 17.020601859717075 4 17.04891667516111 5.20199789337773 56.92183978344829 20.827245648012866 5 16.262897398434756 6.0639008754940935 55.68051827438188 21.992683451689263 6 19.71277451213573 7.855662396792498 58.376088704653824 14.055474386417949 7 70.25358748711676 2.9583319175925613 22.79908939553532 3.98899119975536 8 70.96032528059982 3.8349586037398207 21.43997825422174 3.764737861438619 9 65.8987688718245 5.206528263848776 23.04939236406057 5.845310500266159 10 34.012888903990124 21.642712332801015 29.619562139693972 14.72483662351489 11 26.084740579660902 21.69820937107132 35.079791149921284 17.137258899346495 12 21.83525307782044 20.86575379701675 39.196765315483674 18.102227809679135 13 21.684618259658183 19.642553769834528 41.24336017577838 17.429467794728914 14 19.81584044035201 20.647163421788818 41.73717055712231 17.799825580736865 15 19.320897466390313 19.741089327579765 42.16076019616504 18.77725300986488 16 21.458099736105922 20.15901600353369 39.752868290804486 18.63001596955591 17 21.19307306354977 19.934762665216947 39.350797911499214 19.521366359734067 18 22.11953382487853 18.677584859501888 39.47878087730624 19.724100438313343 19 21.80014270666984 20.866886389634512 37.97469788091921 19.358273022776437 20 23.50356200378286 22.199947900739584 37.01312674843986 17.283363347037703 21 22.916879027782496 22.504615314917377 37.3336504592663 17.24485519803382 22 22.555581982716635 20.24396044986579 37.83085861846352 19.36959894895405 23 20.69133453388151 22.41287531287871 37.4480423136602 19.44774783957958 24 20.34929156331759 22.269036050423026 37.27928601361376 20.102386372645622 25 20.550893049279104 23.90903016094141 35.677800052099265 19.862276737680222 26 20.367413045201772 22.40268197931886 36.61898451745891 20.610920458020455 27 19.99592266657606 22.07762789802136 37.23624749413884 20.690201941263748 28 18.649270044057854 22.84212791501025 37.23284971628555 21.275752324646348 29 20.435368602267452 22.34378716319527 36.47401266238547 20.746831572151812 30 21.610999739503697 21.536248626731453 37.42992083177602 19.422830801988834 31 21.563430849557722 22.68583013375919 35.942826724655404 19.80791229202768 32 21.726524186515352 22.60994642836918 34.61203039878586 21.051498986329605 33 22.164837529588983 23.505827189018383 33.2551844427078 21.074150838684833 34 21.32218862197456 24.470796099351023 33.57231037568097 20.63470490299344 35 21.153432321928126 25.983939836680143 32.14637626991947 20.71625157147226 36 21.64724270327206 26.499269477761544 31.329776992513565 20.523710826452835 37 21.220255286376045 25.904658353436854 31.359224400575357 21.515861959611748 38 22.14558345508704 25.846896129931025 31.035302911895617 20.972217503086316 39 22.469504943766776 25.747227979568027 30.008041407586106 21.77522566907909 40 23.057320512384898 25.623775384232044 30.738563646042156 20.5803404573409 41 20.95183083596661 26.567225034827224 30.261742153964637 22.219201975241525 42 21.186277507843204 26.08247539442538 31.33430736298461 21.39693973474681 43 21.31992343673904 24.88192721959838 31.58574292412762 22.212406419534958 44 21.752573816723864 25.391593897590976 30.707983645362603 22.14784864032256 45 22.06969974969703 25.18546204115842 30.005776222350583 22.73906198679397 46 21.400337512600093 25.69626131176877 31.52005255229746 21.383348623333674 47 20.296059710282808 26.311259103213164 32.29474590284621 21.09793528365782 48 20.488600455302233 26.20706058237912 32.086348861178124 21.217990101140522 49 21.729921964368636 25.013307963258697 31.987813303432887 21.26895676893978 50 20.694732311734793 25.626040569467566 31.313920695864905 22.365306422932736 51 20.38440193446819 25.19225759686498 30.798591054783504 23.62474941388332 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 45.0 1 109.0 2 173.0 3 2030.5 4 3888.0 5 2635.0 6 1382.0 7 1356.0 8 1330.0 9 1302.0 10 1274.0 11 1280.0 12 1286.0 13 1211.5 14 1137.0 15 1109.5 16 1082.0 17 1021.0 18 960.0 19 895.0 20 830.0 21 792.5 22 755.0 23 724.0 24 693.0 25 744.5 26 831.0 27 866.0 28 951.5 29 1037.0 30 1167.5 31 1298.0 32 1438.0 33 1578.0 34 1745.0 35 1912.0 36 2044.0 37 2176.0 38 2394.5 39 2613.0 40 2800.0 41 2987.0 42 3300.0 43 3613.0 44 3826.5 45 4040.0 46 4855.5 47 5671.0 48 5883.5 49 6096.0 50 6047.0 51 5998.0 52 5649.0 53 5300.0 54 5099.0 55 4898.0 56 4674.0 57 4450.0 58 4267.0 59 4084.0 60 3811.0 61 3538.0 62 3177.0 63 2816.0 64 2492.5 65 2169.0 66 1918.0 67 1667.0 68 1457.5 69 1248.0 70 1095.5 71 943.0 72 780.0 73 617.0 74 529.0 75 367.5 76 294.0 77 232.5 78 171.0 79 129.0 80 87.0 81 58.0 82 29.0 83 22.0 84 15.0 85 10.5 86 6.0 87 4.5 88 3.0 89 1.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 88293.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 69.73599266079984 #Duplication Level Percentage of deduplicated Percentage of total 1 78.45936464626779 54.71441677143149 2 13.277138959267198 18.517889300397538 3 4.828493471058273 10.10159355781319 4 1.8742285454427337 5.228047523586241 5 0.7617098681218736 2.6559296886502897 6 0.3102059377639187 1.2979511399544699 7 0.15429091145325796 0.7531740908112761 8 0.07633339829792762 0.4258548242782554 9 0.037354641720262455 0.23444667187659268 >10 0.20301435717533944 2.401096349653993 >50 0.009744689144416292 0.474556306841992 >100 0.006496459429610862 0.6716274223324613 >500 0.0 0.0 >1k 0.0016241148574027155 2.523416352372215 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2228 2.523416352372215 No Hit GAATCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCGTCTTC 161 0.1823474114595721 RNA PCR Primer, Index 21 (95% over 23bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCC 159 0.18008222622404946 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGCCG 156 0.17668444837076552 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGC 117 0.13251333627807416 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTTCGATCTCGTATGC 96 0.10872889130508648 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10193333559851857 0.0 2 0.0 0.0 0.0 0.29560667323570383 0.0 3 0.0 0.0 0.0 0.4417111209269138 0.0 4 0.0 0.0 0.0 0.6920140894521649 0.0 5 0.0 0.0 0.0 1.3613763265491035 0.0 6 0.0 0.0 0.0 1.948059302549466 0.0 7 0.0 0.0 0.0 2.429411165098026 0.0 8 0.0 0.0 0.0 3.0387459934536145 0.0 9 0.0 0.0 0.0 3.437418594905598 0.0 10 0.0 0.0 0.0 4.21211194545434 0.0 11 0.0 0.0 0.0 5.205395671231015 0.0 12 0.0 0.0 0.0 6.053707541934242 0.0 13 0.0 0.0 0.0 6.435391254119805 0.0 14 0.0 0.0 0.0 6.6505838514944555 0.0 15 0.0 0.0 0.0 6.8646438562513445 0.0 16 0.0 0.0 0.0 7.153454973780481 0.0 17 0.0 0.0 0.0 7.521547574552909 0.0 18 0.0 0.0 0.0 7.855662396792498 0.0 19 0.0 0.0 0.0 8.105965365317749 0.0 20 0.0 0.0 0.0 8.316627592221353 0.0 21 0.0 0.0 0.0 8.517096485565107 0.0 22 0.0 0.0 0.0 8.72662611985095 0.0 23 0.0 0.0 0.0 8.905575753457239 0.0 24 0.0 0.0 0.0 9.05394538638397 0.0 25 0.0 0.0 0.0 9.175132796484432 0.0 26 0.0 0.0 0.0 9.30085057705594 0.0 27 0.0 0.0 0.0 9.43109872809849 0.0 28 0.0 0.0 0.0 9.56021428652328 0.0 29 0.0 0.0 0.0 9.694992808036877 0.0 30 0.0 0.0 0.0 9.852423181905701 0.0 31 0.0 0.0 0.0 9.99059948127258 0.0 32 0.0 0.0 0.0 10.19673133770514 0.0 33 0.0 0.0 0.0 10.336040229689782 0.0 34 0.0 0.0 0.0 10.48101208476323 0.0 35 0.0 0.0 0.0 10.649768384809668 0.0 36 0.0 0.0 0.0 10.800403202971923 0.0 37 0.0 0.0 0.0 10.937446909721043 0.0 38 0.0 0.0 0.0 11.094877283589865 0.0 39 0.0 0.0 0.0 11.40067729038542 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATCCTAG 30 2.1427204E-6 45.000004 14 ATACTAT 30 2.1427204E-6 45.000004 45 GCCCTAC 30 2.1427204E-6 45.000004 26 ACTAATC 30 2.1427204E-6 45.000004 10 CTAATCC 30 2.1427204E-6 45.000004 11 TAATCCT 30 2.1427204E-6 45.000004 12 CACATCC 20 6.997903E-4 45.0 45 TGCGGGC 25 3.861507E-5 45.0 4 TGTTGCG 20 6.997903E-4 45.0 1 AACATGG 55 1.8189894E-12 45.0 10 GGAAATA 20 6.997903E-4 45.0 8 CTTTCGG 25 3.861507E-5 45.0 2 AGGGCGA 20 6.997903E-4 45.0 6 CGTTTTT 1360 0.0 43.676468 1 TCAAGCG 55 6.002665E-11 40.909092 17 AGTTGGG 50 1.0568328E-9 40.5 3 GGCGATC 50 1.0568328E-9 40.5 8 TTTGGGC 245 0.0 40.408165 4 GTCTTTG 45 1.8939318E-8 40.0 1 GCGATGT 40 3.4100958E-7 39.375 9 >>END_MODULE