FastQCFastQC Report
Sat 14 Jan 2017
SRR2933618.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933618.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences83583
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36524.369309548592417No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC4390.5252264216407643No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC3020.3613174927915964No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC2200.26321141858990466No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1900.22731895241855402No Hit
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC1680.20099781055956356No Hit
CTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGCT1610.1926229017862484No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1560.18664082409102328No Hit
TCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC1520.18185516193484322No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT980.11724872282641208No Hit
TCCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTG880.10528456743596187No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT850.10169532081882679No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GGGTTCA206.9957494E-445.0000047
GGTTCAT206.9957494E-445.0000048
TGGGTTC302.141338E-645.0000046
TGGGCCA206.9957494E-445.0000046
TGCGGGT206.9957494E-445.0000044
GGAGCAA206.9957494E-445.0000048
GCGGGCT253.8597267E-545.05
GCGATTT253.8597267E-545.09
TGGGACC453.765308E-1045.06
CTTTTTG453.765308E-1045.01
CGTTTTT13500.044.8333321
TTGGGAC1150.043.043485
TGGGACT1000.042.756
CTTGGGA1650.040.909094
TTGGGAG1600.040.7812545
TCTGGGT501.0568328E-940.54
GCGGGGT451.891749E-840.05
CGGGCTG451.891749E-840.06
GTTTTTT16850.039.525222
CGCTTGG403.4071854E-739.3750042