Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933618.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 83583 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3652 | 4.369309548592417 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC | 439 | 0.5252264216407643 | No Hit |
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC | 302 | 0.3613174927915964 | No Hit |
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC | 220 | 0.26321141858990466 | No Hit |
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 190 | 0.22731895241855402 | No Hit |
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC | 168 | 0.20099781055956356 | No Hit |
CTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGCT | 161 | 0.1926229017862484 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 156 | 0.18664082409102328 | No Hit |
TCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC | 152 | 0.18185516193484322 | No Hit |
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 98 | 0.11724872282641208 | No Hit |
TCCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTG | 88 | 0.10528456743596187 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 85 | 0.10169532081882679 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GGGTTCA | 20 | 6.9957494E-4 | 45.000004 | 7 |
GGTTCAT | 20 | 6.9957494E-4 | 45.000004 | 8 |
TGGGTTC | 30 | 2.141338E-6 | 45.000004 | 6 |
TGGGCCA | 20 | 6.9957494E-4 | 45.000004 | 6 |
TGCGGGT | 20 | 6.9957494E-4 | 45.000004 | 4 |
GGAGCAA | 20 | 6.9957494E-4 | 45.000004 | 8 |
GCGGGCT | 25 | 3.8597267E-5 | 45.0 | 5 |
GCGATTT | 25 | 3.8597267E-5 | 45.0 | 9 |
TGGGACC | 45 | 3.765308E-10 | 45.0 | 6 |
CTTTTTG | 45 | 3.765308E-10 | 45.0 | 1 |
CGTTTTT | 1350 | 0.0 | 44.833332 | 1 |
TTGGGAC | 115 | 0.0 | 43.04348 | 5 |
TGGGACT | 100 | 0.0 | 42.75 | 6 |
CTTGGGA | 165 | 0.0 | 40.90909 | 4 |
TTGGGAG | 160 | 0.0 | 40.781254 | 5 |
TCTGGGT | 50 | 1.0568328E-9 | 40.5 | 4 |
GCGGGGT | 45 | 1.891749E-8 | 40.0 | 5 |
CGGGCTG | 45 | 1.891749E-8 | 40.0 | 6 |
GTTTTTT | 1685 | 0.0 | 39.52522 | 2 |
CGCTTGG | 40 | 3.4071854E-7 | 39.375004 | 2 |