SRR2933617.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933617.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	84145
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3668	4.359141957335551	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC	430	0.5110226394913542	No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	320	0.3802959177610078	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC	210	0.24956919603066138	No Hit
TCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	175	0.20797433002555113	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	173	0.20559748053954482	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	161	0.19133638362350705	No Hit
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC	155	0.18420583516548814	No Hit
CTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGCT	146	0.17351001247845982	No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	97	0.11527720007130549	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	93	0.11052350109929288	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCAAGCG	25	3.8599435E-5	45.000004	17
TGCGTTG	25	3.8599435E-5	45.000004	1
GTCAAGC	25	3.8599435E-5	45.000004	16
GGCCGAT	30	2.1415071E-6	45.000004	8
GCGTTGG	25	3.8599435E-5	45.000004	2
GGGAACA	25	3.8599435E-5	45.000004	7
TTCGGGA	30	2.1415071E-6	45.000004	4
ACACGTG	20	6.996014E-4	45.0	42
ACACGAC	20	6.996014E-4	45.0	26
AAACACG	20	6.996014E-4	45.0	40
GGACCGA	20	6.996014E-4	45.0	8
CACGTGA	20	6.996014E-4	45.0	43
GGATTTG	20	6.996014E-4	45.0	8
TTCTGCG	20	6.996014E-4	45.0	1
ACCAAAG	20	6.996014E-4	45.0	31
CACGACC	20	6.996014E-4	45.0	27
TCTGCGG	20	6.996014E-4	45.0	2
TTCTCGG	20	6.996014E-4	45.0	2
GACCGAT	20	6.996014E-4	45.0	9
ACGACCA	20	6.996014E-4	45.0	28