FastQCFastQC Report
Sat 14 Jan 2017
SRR2933617.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933617.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences84145
Sequences flagged as poor quality0
Sequence length51
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT36684.359141957335551No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC4300.5110226394913542No Hit
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC3200.3802959177610078No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC2100.24956919603066138No Hit
TCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC1750.20797433002555113No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1730.20559748053954482No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1610.19133638362350705No Hit
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC1550.18420583516548814No Hit
CTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGCT1460.17351001247845982No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT970.11527720007130549No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT930.11052350109929288No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCAAGCG253.8599435E-545.00000417
TGCGTTG253.8599435E-545.0000041
GTCAAGC253.8599435E-545.00000416
GGCCGAT302.1415071E-645.0000048
GCGTTGG253.8599435E-545.0000042
GGGAACA253.8599435E-545.0000047
TTCGGGA302.1415071E-645.0000044
ACACGTG206.996014E-445.042
ACACGAC206.996014E-445.026
AAACACG206.996014E-445.040
GGACCGA206.996014E-445.08
CACGTGA206.996014E-445.043
GGATTTG206.996014E-445.08
TTCTGCG206.996014E-445.01
ACCAAAG206.996014E-445.031
CACGACC206.996014E-445.027
TCTGCGG206.996014E-445.02
TTCTCGG206.996014E-445.02
GACCGAT206.996014E-445.09
ACGACCA206.996014E-445.028