Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933617.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 84145 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 42 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 3668 | 4.359141957335551 | No Hit |
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCC | 430 | 0.5110226394913542 | No Hit |
CCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC | 320 | 0.3802959177610078 | No Hit |
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGC | 210 | 0.24956919603066138 | No Hit |
TCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC | 175 | 0.20797433002555113 | No Hit |
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 173 | 0.20559748053954482 | No Hit |
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA | 161 | 0.19133638362350705 | No Hit |
GCTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGC | 155 | 0.18420583516548814 | No Hit |
CTGTCTCTTATACACATCTGACGCGCGAATCATCGTATGCCGTCTTCTGCT | 146 | 0.17351001247845982 | No Hit |
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 97 | 0.11527720007130549 | No Hit |
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 93 | 0.11052350109929288 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCAAGCG | 25 | 3.8599435E-5 | 45.000004 | 17 |
TGCGTTG | 25 | 3.8599435E-5 | 45.000004 | 1 |
GTCAAGC | 25 | 3.8599435E-5 | 45.000004 | 16 |
GGCCGAT | 30 | 2.1415071E-6 | 45.000004 | 8 |
GCGTTGG | 25 | 3.8599435E-5 | 45.000004 | 2 |
GGGAACA | 25 | 3.8599435E-5 | 45.000004 | 7 |
TTCGGGA | 30 | 2.1415071E-6 | 45.000004 | 4 |
ACACGTG | 20 | 6.996014E-4 | 45.0 | 42 |
ACACGAC | 20 | 6.996014E-4 | 45.0 | 26 |
AAACACG | 20 | 6.996014E-4 | 45.0 | 40 |
GGACCGA | 20 | 6.996014E-4 | 45.0 | 8 |
CACGTGA | 20 | 6.996014E-4 | 45.0 | 43 |
GGATTTG | 20 | 6.996014E-4 | 45.0 | 8 |
TTCTGCG | 20 | 6.996014E-4 | 45.0 | 1 |
ACCAAAG | 20 | 6.996014E-4 | 45.0 | 31 |
CACGACC | 20 | 6.996014E-4 | 45.0 | 27 |
TCTGCGG | 20 | 6.996014E-4 | 45.0 | 2 |
TTCTCGG | 20 | 6.996014E-4 | 45.0 | 2 |
GACCGAT | 20 | 6.996014E-4 | 45.0 | 9 |
ACGACCA | 20 | 6.996014E-4 | 45.0 | 28 |