##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933610.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 146542 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.915894419347353 33.0 31.0 34.0 30.0 34.0 2 32.08986502163202 33.0 31.0 34.0 30.0 34.0 3 32.24990787624026 33.0 31.0 34.0 30.0 34.0 4 35.812975119760885 37.0 35.0 37.0 35.0 37.0 5 35.8362380750911 37.0 35.0 37.0 35.0 37.0 6 35.80404935103929 37.0 35.0 37.0 35.0 37.0 7 35.855099561900346 37.0 35.0 37.0 35.0 37.0 8 35.6349374240832 37.0 35.0 37.0 33.0 37.0 9 37.42357139932579 39.0 37.0 39.0 34.0 39.0 10 36.901871135920075 39.0 37.0 39.0 32.0 39.0 11 36.95764354246564 39.0 37.0 39.0 33.0 39.0 12 37.10377229736185 39.0 37.0 39.0 34.0 39.0 13 37.056127253620126 39.0 37.0 39.0 33.0 39.0 14 38.07318720912776 40.0 37.0 41.0 33.0 41.0 15 38.08726508441266 40.0 37.0 41.0 33.0 41.0 16 38.17300842079404 40.0 37.0 41.0 33.0 41.0 17 38.175560590137984 40.0 37.0 41.0 33.0 41.0 18 38.025146374418256 39.0 37.0 40.0 33.0 41.0 19 37.831072320563386 39.0 37.0 41.0 34.0 41.0 20 37.48022409957555 39.0 35.0 40.0 33.0 41.0 21 37.341963396159464 39.0 35.0 40.0 33.0 41.0 22 37.369075077452194 39.0 35.0 40.0 33.0 41.0 23 37.349694967995525 39.0 35.0 40.0 33.0 41.0 24 37.26326240941164 39.0 35.0 40.0 33.0 41.0 25 37.16340025385214 39.0 35.0 40.0 33.0 41.0 26 37.05211475208473 39.0 35.0 40.0 32.0 41.0 27 37.000620982380475 39.0 35.0 40.0 32.0 41.0 28 36.890277190157086 39.0 35.0 40.0 32.0 41.0 29 36.7553534140383 39.0 35.0 40.0 31.0 41.0 30 36.69777947619112 38.0 35.0 40.0 31.0 41.0 31 36.383500975829456 38.0 35.0 40.0 31.0 41.0 32 35.942016623220645 38.0 35.0 40.0 30.0 41.0 33 35.69316646422186 38.0 35.0 40.0 29.0 41.0 34 35.46584596907371 38.0 35.0 40.0 26.0 41.0 35 35.07739078216484 38.0 35.0 40.0 25.0 41.0 36 35.03851455555404 38.0 35.0 40.0 24.0 41.0 37 34.85437621978682 38.0 34.0 40.0 23.0 41.0 38 34.43831802486659 38.0 33.0 40.0 23.0 41.0 39 34.26034174502873 38.0 33.0 40.0 22.0 41.0 40 34.273914645630605 38.0 33.0 40.0 22.0 41.0 41 34.36565626236847 38.0 33.0 40.0 22.0 41.0 42 34.50225191412701 38.0 34.0 40.0 22.0 41.0 43 34.4436953228426 38.0 34.0 40.0 21.0 41.0 44 34.25458230404935 38.0 33.0 40.0 21.0 41.0 45 34.23171513968691 38.0 33.0 40.0 20.0 41.0 46 34.000034119911014 37.0 33.0 40.0 20.0 41.0 47 33.82882723041858 37.0 33.0 40.0 20.0 41.0 48 33.859780813691636 37.0 33.0 40.0 20.0 41.0 49 34.00779981165809 38.0 33.0 40.0 20.0 41.0 50 33.98563551746257 38.0 33.0 40.0 20.0 41.0 51 32.85698980497059 36.0 31.0 40.0 16.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 2.0 12 2.0 13 7.0 14 7.0 15 6.0 16 6.0 17 21.0 18 36.0 19 84.0 20 132.0 21 217.0 22 363.0 23 582.0 24 976.0 25 1784.0 26 2648.0 27 3002.0 28 3017.0 29 2935.0 30 3384.0 31 3803.0 32 4682.0 33 5997.0 34 8861.0 35 11960.0 36 16427.0 37 22677.0 38 33417.0 39 19498.0 40 5.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.633210956585824 5.504906443203996 42.81844112950554 27.043441470704643 2 32.85065032550395 5.777183333105867 42.57277777019557 18.799388571194605 3 20.58931910305578 5.34863725075405 53.21136602475741 20.850677621432766 4 15.964706364045803 6.014657913772161 54.06436380013921 23.956271922042827 5 13.600878928907752 6.855372521188465 54.681251791295324 24.862496758608454 6 17.51170312947824 7.741125411144928 59.751470568164756 14.995700891212078 7 68.16339342986993 2.9854922138363063 22.935404184465888 5.915710171827872 8 66.1155163707333 3.6883623807509114 22.392215201102754 7.803906047413029 9 59.821757584856215 5.902744605642068 25.80420630262996 8.47129150687175 10 28.53106959097051 21.234867819464725 31.892563224195115 18.341499365369653 11 18.151792660124745 18.411786382061116 37.21185735147603 26.224563606338116 12 17.07428587026245 15.126038951290417 44.542861432217386 23.25681374622975 13 21.41092656030353 16.847729661121043 45.39927119870072 16.34207257987471 14 18.785740606788497 18.75366789043414 43.57180876472274 18.88878273805462 15 12.68237092437663 18.58170353891717 45.468193418951564 23.267732117754637 16 11.767957309167338 18.323074613421408 43.38346685591844 26.525501221492814 17 11.653996806376329 18.972035320931884 40.99780267773062 28.37616519496117 18 13.173015244776243 17.235331850254536 45.403365588022545 24.188287316946678 19 13.525132726453851 21.004217221001486 45.65244093843403 19.81820911411063 20 14.16453985888005 24.52334484311665 42.06575589250863 19.24635940549467 21 12.978531751989191 26.35967845395859 41.94087701819274 18.72091277585948 22 11.125138185639612 24.622974983281242 39.26655839281571 24.985328438263434 23 11.468384490453248 24.904123050047087 36.2803837807591 27.347108678740568 24 13.306765295956108 23.93784717009458 37.050811371483945 25.70457616246537 25 12.356184575070628 26.964283277149214 33.63950266817704 27.040029479603117 26 12.040234199069209 28.469653751143014 35.97671657272318 23.5133954770646 27 15.261836197131199 25.851974178051346 37.87378362517231 21.012405999645154 28 13.367498737563293 22.557355570416675 38.15766128481937 25.917484407200664 29 15.581198564234144 21.47370719657163 37.04808177860272 25.8970124605915 30 24.218312838640117 23.703784580529813 32.700522717036755 19.377379863793315 31 22.471373394658187 30.11423346207913 27.701273355079092 19.71311978818359 32 19.537743445565095 28.444405016991713 28.707810730029614 23.310040807413575 33 24.95871490767152 21.67910906088357 27.89302725498492 25.469148776459992 34 22.740920691678838 22.629007383548743 28.709175526470226 25.920896398302197 35 20.32727818645849 26.764340598599716 29.002606761201566 23.905774453740225 36 28.275170258355963 27.050265452907702 26.41972949734547 18.254834791390863 37 29.51167583354943 23.855959383657925 29.031949884674702 17.600414898117947 38 26.283932251504687 20.279510311037107 33.954770645958156 19.481786791500046 39 26.883077888932867 19.91101527207217 31.837971366570677 21.36793547242429 40 25.286948451638438 25.90247164635395 30.430866236300858 18.37971366570676 41 19.529554666921427 27.145118805530156 31.935554312074355 21.38977221547406 42 21.60677484953119 21.590397292243864 32.71690027432408 24.08592758390086 43 22.097419169930806 17.8078639570908 36.0046948997557 24.090021973222694 44 23.239753790722116 18.162028633429326 32.43438741111763 26.16383016473093 45 26.82916842952874 18.391314435451953 29.764163175062443 25.015353959956872 46 26.55416194674564 20.530632856109513 34.47953487737304 18.435670319771805 47 18.907207490002868 24.784703361493634 36.87952941818728 19.428559730316223 48 17.479630413123886 21.37953624216948 39.08777005909568 22.053063285610953 49 23.859371374759455 16.20627533403393 37.64449782314968 22.289855468056942 50 22.421558324575887 14.705681647582264 33.89335480613067 28.97940522171118 51 18.669050511116268 14.892658759945954 31.333679081764952 35.104611647172824 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 259.0 1 571.5 2 884.0 3 3634.5 4 6385.0 5 4054.5 6 1724.0 7 1643.0 8 1562.0 9 1557.5 10 1553.0 11 1467.0 12 1381.0 13 1276.5 14 1172.0 15 1126.5 16 1081.0 17 991.5 18 902.0 19 891.5 20 881.0 21 803.5 22 726.0 23 741.0 24 756.0 25 773.5 26 823.0 27 855.0 28 859.0 29 863.0 30 998.5 31 1134.0 32 1230.0 33 1326.0 34 1631.0 35 1936.0 36 2020.5 37 2105.0 38 2325.0 39 2545.0 40 3133.5 41 3722.0 42 4860.0 43 5998.0 44 7332.5 45 8667.0 46 11863.0 47 15059.0 48 18854.5 49 22650.0 50 22934.0 51 23218.0 52 19107.5 53 14997.0 54 11070.0 55 7143.0 56 5318.0 57 3493.0 58 2979.5 59 2466.0 60 2222.0 61 1978.0 62 1850.0 63 1722.0 64 1599.5 65 1477.0 66 1244.0 67 1011.0 68 839.5 69 668.0 70 576.0 71 484.0 72 434.0 73 384.0 74 318.5 75 191.5 76 130.0 77 118.5 78 107.0 79 79.0 80 51.0 81 39.0 82 27.0 83 16.0 84 5.0 85 4.5 86 4.0 87 5.0 88 6.0 89 3.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 146542.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 55.930040534454285 #Duplication Level Percentage of deduplicated Percentage of total 1 76.77309940093458 42.9392256144996 2 12.30463269115799 13.763972103560754 3 4.854747989897634 8.145787555786054 4 2.131501567818841 4.768598763494425 5 1.1603079513427117 3.244803537552374 6 0.6771513280706677 2.27238607361712 7 0.3977501494613292 1.5572327387370175 8 0.27818108612632836 1.2446943538371253 9 0.2110759995607667 1.0624940290155724 >10 1.1115042520223033 11.241828281311843 >50 0.06710508656556168 2.6511170858866397 >100 0.02806212710923488 2.8592485430797994 >500 0.003660277449030637 1.525842420602967 >1k 0.0012200924830102122 2.7227688990187113 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3990 2.7227688990187113 No Hit CCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 788 0.5377297976006878 Illumina PCR Primer Index 5 (96% over 25bp) CTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGCT 771 0.5261290278554953 Illumina PCR Primer Index 5 (96% over 26bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCC 677 0.4619835951467839 No Hit GCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 481 0.32823354396691734 RNA PCR Primer, Index 33 (96% over 27bp) TCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTGC 460 0.31390318134050305 RNA PCR Primer, Index 33 (96% over 27bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGC 326 0.2224618198195739 No Hit GGGACTGTCTAGGGCCTGTCTCTTATACACATCTGACGCAGGTGATCTCGT 239 0.16309317465300052 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 234 0.1596811835514733 No Hit TCCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 215 0.1467156173656699 Illumina PCR Primer Index 5 (95% over 24bp) GGCCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCT 195 0.13306765295956108 Illumina PCR Primer Index 5 (95% over 23bp) GCCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 159 0.10850131702856518 RNA PCR Primer, Index 33 (96% over 26bp) CGCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTCTG 158 0.10781891880825975 Illumina PCR Primer Index 5 (95% over 24bp) GGGCCTGTCTCTTATACACATCTGACGCAGGTGATCTCGTATGCCGTCTTC 147 0.1003125383848999 RNA PCR Primer, Index 33 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5622961335316837 0.0 2 0.0 0.0 0.0 1.8711359200775204 0.0 3 0.0 0.0 0.0 2.6135851837698407 0.0 4 0.0 0.0 0.0 3.809146865744974 0.0 5 0.0 0.0 0.0 6.461628748072225 0.0 6 0.0 0.0 0.0 8.95033505752617 0.0 7 0.0 0.0 0.0 11.04461519564357 0.0 8 0.0 0.0 0.0 14.055356143631178 0.0 9 0.0 0.0 0.0 15.517735529745739 0.0 10 0.0 0.0 0.0 18.727054359842228 0.0 11 0.0 0.0 0.0 26.911056215965388 0.0 12 0.0 0.0 0.0 33.99162014985465 0.0 13 0.0 0.0 0.0 36.24558147152352 0.0 14 0.0 0.0 0.0 37.031704221315394 0.0 15 0.0 0.0 0.0 38.17540363854731 0.0 16 0.0 0.0 0.0 40.93570443968282 0.0 17 0.0 0.0 0.0 44.175048791472754 0.0 18 0.0 0.0 0.0 46.98038787514842 0.0 19 0.0 0.0 0.0 48.63520355938912 0.0 20 0.0 0.0 0.0 49.92834818686793 0.0 21 0.0 0.0 0.0 51.53880798678877 0.0 22 0.0 0.0 0.0 52.923393975788514 0.0 23 0.0 0.0 0.0 53.98657040302439 0.0 24 0.0 0.0 0.0 54.54272495257332 0.0 25 0.0 0.0 0.0 54.92145596484284 0.0 26 0.0 0.0 0.0 55.18690887254166 0.0 27 0.0 0.0 0.0 55.43120743541101 0.0 28 0.0 0.0 0.0 55.62637332641837 0.0 29 0.0 0.0 0.0 55.82563360674755 0.0 30 0.0 0.0 0.0 56.05355461232957 0.0 31 0.0 0.0 0.0 56.23166054782929 0.0 32 0.0 0.0 0.0 56.40430729756657 0.0 33 0.0 0.0 0.0 56.56740047221957 0.0 34 0.0 0.0 0.0 56.71821047890707 0.0 35 0.0 0.0 0.0 56.874479671357015 0.0 36 0.0 0.0 0.0 57.0225600851633 0.0 37 0.0 0.0 0.0 57.15562773812286 0.0 38 0.0 0.0 0.0 57.314626523454024 0.0 39 0.0 0.0 0.0 57.47499010522581 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTGATGG 20 7.013128E-4 45.0 2 ATGGGAC 20 7.013128E-4 45.0 5 ATGGGAA 20 7.013128E-4 45.0 5 TCTGAGG 20 7.013128E-4 45.0 2 CCCTCGT 20 7.013128E-4 45.0 14 GGGCTTA 20 7.013128E-4 45.0 7 GAAGACC 25 3.8741044E-5 45.0 30 GTCCTTG 20 7.013128E-4 45.0 1 GGGTATT 20 7.013128E-4 45.0 7 GTGGGCA 20 7.013128E-4 45.0 5 GAATATA 45 3.8016879E-10 45.0 15 GATCAAC 40 6.7448127E-9 45.0 9 GTAGGGC 25 3.8741044E-5 45.0 4 GCGTTTG 20 7.013128E-4 45.0 1 GCACCGA 20 7.013128E-4 45.0 9 GGCTTAG 20 7.013128E-4 45.0 1 ATATACC 20 7.013128E-4 45.0 17 CTACGAA 50 2.1827873E-11 45.0 11 TACGAAT 45 3.8016879E-10 45.0 12 GCTTAGG 20 7.013128E-4 45.0 2 >>END_MODULE