SRR2933607.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933607.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	73170
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3461	4.730080634139674	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCC	436	0.5958726253929206	No Hit
CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	417	0.5699056990569906	No Hit
CTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGCT	293	0.4004373377067104	Illumina Single End Adapter 2 (95% over 21bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGC	228	0.3116031160311603	No Hit
GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	188	0.2569359026923602	No Hit
TCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC	187	0.25556922235889024	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	130	0.17766844335110019	No Hit
GGCCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCT	85	0.11616782834495012	No Hit
GCCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTG	78	0.10660106601066012	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	77	0.10523438567719011	No Hit
TCCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTG	76	0.10386770534372011	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCG	75	0.1025010250102501	No Hit
CGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTG	74	0.10113434467678009	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCTGTTG	25	3.854977E-5	45.000004	1
ACTGAAG	25	3.854977E-5	45.000004	4
GTTCTTG	25	3.854977E-5	45.000004	1
TGCTCTG	35	1.1912016E-7	45.000004	1
CGAATAT	25	3.854977E-5	45.000004	14
TACTGAA	25	3.854977E-5	45.000004	3
AAGCTAC	25	3.854977E-5	45.000004	8
TTCGGGA	50	2.1827873E-11	45.000004	4
GCCCTAA	20	6.9900084E-4	45.0	40
GCGGGAT	20	6.9900084E-4	45.0	5
TTCCGTG	20	6.9900084E-4	45.0	1
ACTTGGG	20	6.9900084E-4	45.0	3
GCGATGG	20	6.9900084E-4	45.0	9
CCAAAGT	20	6.9900084E-4	45.0	32
GTACTGG	20	6.9900084E-4	45.0	2
CCTAACT	20	6.9900084E-4	45.0	42
CAACTAG	20	6.9900084E-4	45.0	16
GGCGATC	20	6.9900084E-4	45.0	8
GACATTA	20	6.9900084E-4	45.0	20
ACATTAA	20	6.9900084E-4	45.0	21