##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933607.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 73170 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.978720787207873 33.0 31.0 34.0 30.0 34.0 2 32.212204455377886 34.0 31.0 34.0 30.0 34.0 3 32.29557195571956 34.0 31.0 34.0 30.0 34.0 4 35.86744567445675 37.0 35.0 37.0 35.0 37.0 5 35.95865791991253 37.0 35.0 37.0 35.0 37.0 6 35.96508131747984 37.0 35.0 37.0 35.0 37.0 7 35.92838595052617 37.0 35.0 37.0 35.0 37.0 8 35.76678966789668 37.0 35.0 37.0 35.0 37.0 9 37.612491458247916 39.0 37.0 39.0 35.0 39.0 10 37.107899412327455 39.0 37.0 39.0 33.0 39.0 11 37.10240535738691 39.0 37.0 39.0 33.0 39.0 12 37.21544348776821 39.0 37.0 39.0 34.0 39.0 13 37.21407680743474 39.0 37.0 39.0 34.0 39.0 14 38.35612956129561 40.0 38.0 41.0 34.0 41.0 15 38.37248872488725 40.0 38.0 41.0 34.0 41.0 16 38.49845565122318 40.0 38.0 41.0 34.0 41.0 17 38.55584255842558 40.0 38.0 41.0 34.0 41.0 18 38.25146918135848 39.0 38.0 40.0 34.0 41.0 19 37.89793631269646 39.0 37.0 40.0 34.0 41.0 20 37.32354790214569 39.0 35.0 40.0 34.0 41.0 21 37.218996856635236 38.0 35.0 40.0 33.0 41.0 22 37.23389367227006 38.0 35.0 40.0 33.0 41.0 23 37.15263085964193 38.0 35.0 40.0 33.0 41.0 24 37.06702200355337 38.0 35.0 40.0 33.0 41.0 25 37.002405357386905 38.0 35.0 40.0 33.0 41.0 26 36.95429820964876 38.0 35.0 40.0 33.0 41.0 27 36.87243405767391 38.0 35.0 40.0 33.0 41.0 28 36.84844881782151 38.0 35.0 40.0 33.0 41.0 29 36.66542298756321 38.0 35.0 40.0 33.0 41.0 30 36.39225092250923 38.0 35.0 40.0 32.0 41.0 31 35.95317753177532 38.0 35.0 40.0 30.0 41.0 32 35.45190651906519 38.0 35.0 40.0 27.0 41.0 33 34.756771901052346 38.0 35.0 40.0 21.0 41.0 34 34.1829848298483 38.0 34.0 40.0 17.0 41.0 35 33.785731857318574 38.0 34.0 40.0 15.0 41.0 36 33.41526581932486 38.0 33.0 40.0 12.0 41.0 37 33.21681016810168 38.0 33.0 40.0 10.0 41.0 38 33.182807161404945 38.0 33.0 40.0 10.0 41.0 39 33.277217438841056 38.0 33.0 40.0 10.0 41.0 40 33.10333470001367 38.0 33.0 40.0 10.0 41.0 41 33.013393467268 38.0 32.0 40.0 10.0 41.0 42 32.772529725297254 38.0 31.0 40.0 10.0 41.0 43 32.479663796637965 37.0 31.0 40.0 10.0 41.0 44 32.25215252152522 37.0 31.0 40.0 10.0 41.0 45 32.27673910072434 37.0 31.0 40.0 10.0 41.0 46 32.04540112067787 37.0 30.0 40.0 8.0 41.0 47 31.98726253929206 37.0 30.0 40.0 8.0 41.0 48 31.90997676643433 37.0 30.0 40.0 8.0 41.0 49 31.92722427224272 37.0 30.0 40.0 8.0 41.0 50 31.76493098264316 37.0 29.0 40.0 8.0 41.0 51 30.93329233292333 35.0 27.0 39.0 8.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 2.0 12 2.0 13 4.0 14 3.0 15 6.0 16 7.0 17 7.0 18 33.0 19 52.0 20 71.0 21 170.0 22 282.0 23 430.0 24 881.0 25 1578.0 26 2421.0 27 2586.0 28 2298.0 29 2000.0 30 1949.0 31 2064.0 32 2158.0 33 2688.0 34 3818.0 35 5261.0 36 6519.0 37 8118.0 38 14319.0 39 13436.0 40 4.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 22.084187508541753 5.709990433237666 34.66311329779965 37.542708760420936 2 40.448271149378165 4.992483258165914 36.18149514828482 18.37775044417111 3 15.998359983599835 4.941916085827525 60.97990979909799 18.07981413147465 4 13.795271286046193 5.056717233839005 61.59628262949296 19.55172885062184 5 11.653683203498701 5.946426130927976 62.37529041957086 20.02460024600246 6 15.697690310236437 6.655733223998907 65.63892305589722 12.007653409867432 7 61.354380210468776 2.3821238212382125 31.866885335520024 4.396610632772995 8 60.2323356566899 2.7634276342763426 31.059177258439252 5.945059450594506 9 55.592455924559246 5.070384037173705 33.24996583299166 6.087194205275386 10 24.451277846111793 21.216345496788303 40.26923602569359 14.063140631406315 11 16.70903375700424 17.541342080087468 45.03621702883696 20.71340713407134 12 15.848025146918134 14.455377887112206 50.63140631406314 19.06519065190652 13 18.724887248872488 17.157304906382397 50.21183545168785 13.905972393057265 14 16.166461664616648 18.359983599836 49.42462757960913 16.048927155938227 15 12.171655049883832 17.285772857728578 51.85731857318573 18.685253519201858 16 11.70288369550362 16.818368183681837 49.349460161268276 22.12928795954626 17 10.964876315429821 17.116304496378298 48.077080770807704 23.84173841738417 18 12.60079267459341 16.241629082957495 51.260079267459346 19.897498974989748 19 13.222632226322265 18.178215115484488 51.65641656416564 16.94273609402761 20 13.691403580702474 20.96214295476288 49.11985786524532 16.226595599289325 21 12.566625666256662 22.555692223588903 49.05425720923876 15.823424900915676 22 10.69427360940276 21.0796774634413 47.28850621839552 20.93754270876042 23 10.948476151428181 21.456881235479024 44.96378297116305 22.630859641929753 24 12.323356566899001 20.77764110974443 45.427087604209376 21.471914719147193 25 10.902009020090201 23.485034850348505 42.78256115894492 22.83039497061637 26 10.515238485718191 25.250785841191746 44.269509361760285 19.96446631132978 27 11.676916769167692 24.351510181768486 46.219762197621975 17.75181085144185 28 9.4943282766161 22.081454147874812 47.083504168375015 21.34071340713407 29 12.103321033210332 20.803608036080362 45.82205822058221 21.271012710127103 30 17.492141588082546 22.931529315293155 42.349323493234934 17.227005603389365 31 16.1049610496105 28.832854995216618 37.23110564438978 17.83107831078311 32 15.410687440207735 27.441574415744157 36.78283449501162 20.36490364903649 33 19.40002733360667 23.392100587672545 35.15238485718191 22.055487221538883 34 17.914445811124775 22.923329233292332 35.082684160174935 24.079540795407954 35 17.477108104414377 27.188738554052204 33.002596692633595 22.331556648899824 36 18.902555692223586 33.76793767937679 30.72024053573869 16.609266092660928 37 16.703567035670357 33.38390050567172 33.009430094300946 16.903102364356975 38 19.37406040727074 27.624709580429137 35.48858821921553 17.512641793084597 39 24.851715183818506 20.38677053437201 35.737324039907065 19.02419024190242 40 24.817548175481754 20.55350553505535 32.54339210058767 22.08555418887522 41 23.45360120267869 23.998906655733222 29.60092934262676 22.946562798961324 42 26.96460297936313 24.771081044143774 30.38950389503895 17.87481208145415 43 23.214432144321442 23.334700013666804 36.06532731993987 17.38554052207189 44 19.781331146644803 22.18395517288506 35.694956949569494 22.339756730900643 45 23.079130791307914 20.168101681016807 32.82629492961596 23.926472598059316 46 24.531911985786525 20.84460844608446 35.433921005876726 19.18955856225229 47 19.559928932622658 24.493644936449364 37.85704523711904 18.089380893808936 48 19.74169741697417 22.141588082547493 39.22645893125598 18.890255569222358 49 23.418067514008474 17.479841465081318 39.80456471231379 19.297526308596417 50 22.148421484214843 15.794724613912805 36.565532321989885 25.491321579882463 51 19.73349733497335 15.297252972529726 33.97020636873035 30.99904332376657 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 156.0 1 329.5 2 503.0 3 3305.5 4 6108.0 5 3862.0 6 1616.0 7 1479.5 8 1343.0 9 1318.0 10 1293.0 11 1218.5 12 1144.0 13 1102.0 14 1060.0 15 993.5 16 927.0 17 854.5 18 782.0 19 751.5 20 721.0 21 672.5 22 624.0 23 554.5 24 485.0 25 494.0 26 501.0 27 499.0 28 523.0 29 547.0 30 610.0 31 673.0 32 801.0 33 929.0 34 1057.5 35 1186.0 36 1272.0 37 1358.0 38 1582.0 39 1806.0 40 2029.5 41 2253.0 42 2782.5 43 3312.0 44 3842.5 45 4373.0 46 5303.0 47 6233.0 48 7745.5 49 9258.0 50 9118.0 51 8978.0 52 7402.0 53 5826.0 54 4448.5 55 3071.0 56 2406.5 57 1742.0 58 1401.5 59 1061.0 60 980.5 61 900.0 62 822.0 63 744.0 64 597.0 65 450.0 66 357.0 67 264.0 68 205.0 69 146.0 70 119.5 71 93.0 72 80.0 73 67.0 74 64.0 75 48.0 76 35.0 77 27.5 78 20.0 79 16.0 80 12.0 81 9.5 82 7.0 83 4.0 84 1.0 85 0.5 86 0.0 87 0.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 73170.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 63.722837228372285 #Duplication Level Percentage of deduplicated Percentage of total 1 81.14571269248917 51.708350416837504 2 10.805130184875392 13.770671040043734 3 3.9291382490455966 7.511275112751127 4 1.5034530090507443 3.832171655049884 5 0.8450220906790203 2.6923602569359026 6 0.44824775876120615 1.7138171381713818 7 0.28310384763865654 1.2628126281262813 8 0.2058937073735684 1.049610496104961 9 0.13940719770085358 0.7995079950799507 >10 0.6477072877793506 7.083504168375017 >50 0.03002616565864539 1.2778461117944513 >100 0.015013082829322694 2.5679923465901324 >500 0.0 0.0 >1k 0.002144726118474671 4.730080634139674 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3461 4.730080634139674 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCC 436 0.5958726253929206 No Hit CCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC 417 0.5699056990569906 No Hit CTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGCT 293 0.4004373377067104 Illumina Single End Adapter 2 (95% over 21bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGC 228 0.3116031160311603 No Hit GCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC 188 0.2569359026923602 No Hit TCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTGC 187 0.25556922235889024 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 130 0.17766844335110019 No Hit GGCCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCT 85 0.11616782834495012 No Hit GCCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTG 78 0.10660106601066012 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 77 0.10523438567719011 No Hit TCCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTG 76 0.10386770534372011 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCG 75 0.1025010250102501 No Hit CGCTGTCTCTTATACACATCTGACGCAAATGCGGTCGTATGCCGTCTTCTG 74 0.10113434467678009 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0013666803334700013 0.0 0.0 0.4359710263769304 0.0 2 0.0013666803334700013 0.0 0.0 1.6741834085007516 0.0 3 0.0013666803334700013 0.0 0.0 2.3301899685663523 0.0 4 0.0013666803334700013 0.0 0.0 3.3032663659969934 0.0 5 0.0013666803334700013 0.0 0.0 5.308186415197485 0.0 6 0.0013666803334700013 0.0 0.0 6.763700970343037 0.0 7 0.0013666803334700013 0.0 0.0 8.064780647806478 0.0 8 0.0013666803334700013 0.0 0.0 10.06696733634003 0.0 9 0.0013666803334700013 0.0 0.0 11.020910209102091 0.0 10 0.0013666803334700013 0.0 0.0 13.366133661336614 0.0 11 0.0013666803334700013 0.0 0.0 19.40686073527402 0.0 12 0.0013666803334700013 0.0 0.0 24.779281126144596 0.0 13 0.0013666803334700013 0.0 0.0 26.520431870985377 0.0 14 0.0013666803334700013 0.0 0.0 27.076670766707668 0.0 15 0.0013666803334700013 0.0 0.0 27.883012163454968 0.0 16 0.0013666803334700013 0.0 0.0 30.00956676233429 0.0 17 0.0013666803334700013 0.0 0.0 32.614459477928115 0.0 18 0.0013666803334700013 0.0 0.0 34.99111657783244 0.0 19 0.0013666803334700013 0.0 0.0 36.319529861965286 0.0 20 0.0013666803334700013 0.0 0.0 37.48120814541479 0.0 21 0.0013666803334700013 0.0 0.0 38.8519885198852 0.0 22 0.0013666803334700013 0.0 0.0 40.06013393467268 0.0 23 0.0013666803334700013 0.0 0.0 40.97580975809758 0.0 24 0.0013666803334700013 0.0 0.0 41.41724750580839 0.0 25 0.0013666803334700013 0.0 0.0 41.723383900505674 0.0 26 0.0013666803334700013 0.0 0.0 41.93385267186005 0.0 27 0.0013666803334700013 0.0 0.0 42.103321033210335 0.0 28 0.0013666803334700013 0.0 0.0 42.32198988656553 0.0 29 0.0013666803334700013 0.0 0.0 42.47642476424764 0.0 30 0.0013666803334700013 0.0 0.0 42.66912669126691 0.0 31 0.0013666803334700013 0.0 0.0 42.831761650949844 0.0 32 0.0013666803334700013 0.0 0.0 42.97116304496378 0.0 33 0.0013666803334700013 0.0 0.0 43.10919775864425 0.0 34 0.0013666803334700013 0.0 0.0 43.2663659969933 0.0 35 0.0013666803334700013 0.0 0.0 43.390733907339076 0.0 36 0.0013666803334700013 0.0 0.0 43.53286866201995 0.0 37 0.0013666803334700013 0.0 0.0 43.68320349870165 0.0 38 0.0013666803334700013 0.0 0.0 43.84857181905152 0.0 39 0.0013666803334700013 0.0 0.0 44.00027333606669 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCTGTTG 25 3.854977E-5 45.000004 1 ACTGAAG 25 3.854977E-5 45.000004 4 GTTCTTG 25 3.854977E-5 45.000004 1 TGCTCTG 35 1.1912016E-7 45.000004 1 CGAATAT 25 3.854977E-5 45.000004 14 TACTGAA 25 3.854977E-5 45.000004 3 AAGCTAC 25 3.854977E-5 45.000004 8 TTCGGGA 50 2.1827873E-11 45.000004 4 GCCCTAA 20 6.9900084E-4 45.0 40 GCGGGAT 20 6.9900084E-4 45.0 5 TTCCGTG 20 6.9900084E-4 45.0 1 ACTTGGG 20 6.9900084E-4 45.0 3 GCGATGG 20 6.9900084E-4 45.0 9 CCAAAGT 20 6.9900084E-4 45.0 32 GTACTGG 20 6.9900084E-4 45.0 2 CCTAACT 20 6.9900084E-4 45.0 42 CAACTAG 20 6.9900084E-4 45.0 16 GGCGATC 20 6.9900084E-4 45.0 8 GACATTA 20 6.9900084E-4 45.0 20 ACATTAA 20 6.9900084E-4 45.0 21 >>END_MODULE