SRR2933600.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933600.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	392098
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12166	3.102795729639019	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCC	787	0.20071512734061384	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	624	0.15914388749751338	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	458	0.11680753281067488	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGC	439	0.11196180546700059	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	436	0.11119669062326254	No Hit
CTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGCT	422	0.10762615468581833	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTCAT	35	1.2091914E-7	45.000004	17
ATCAACC	55	1.8189894E-12	45.000004	10
CACAACG	30	2.161829E-6	45.000004	12
CGTTTTT	4900	0.0	43.484695	1
TGGGACG	65	0.0	41.538464	6
ACCTTCT	45	1.9226718E-8	40.000004	19
ATCTACC	40	3.4504592E-7	39.375004	15
TGGGAAC	390	0.0	39.23077	6
TTGGGAC	635	0.0	38.97638	5
CATATGC	110	0.0	38.86364	33
GTTTTTT	5775	0.0	38.727272	2
TACTCCC	35	6.2377603E-6	38.57143	25
TGTTATC	65	9.094947E-12	38.076927	24
CGGGATA	65	9.094947E-12	38.076927	6
GTTATCT	65	9.094947E-12	38.076927	25
TTTGGGC	1020	0.0	37.72059	4
TTTGGGA	1440	0.0	37.656254	4
GGCCGAT	180	0.0	37.500004	8
TAGCCGT	30	1.13855014E-4	37.500004	44
GACTAAT	330	0.0	37.5	9