SRR2933599.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933599.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	398420
Sequences flagged as poor quality	0
Sequence length	51
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	12087	3.033733246322976	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCC	837	0.21007981527031774	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	487	0.1222328196375684	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGC	442	0.11093820591335778	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	433	0.10867928316851563	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	422	0.10591837759148637	No Hit
CTGTCTCTTATACACATCTGACGCCCGGATAATCGTATGCCGTCTTCTGCT	417	0.10466342051101851	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGTTGT	20	7.027731E-4	45.000004	25
GCGTTAG	20	7.027731E-4	45.000004	1
GTTACGT	20	7.027731E-4	45.000004	22
TTACGTT	20	7.027731E-4	45.000004	23
TATCCGG	25	3.8862017E-5	45.0	2
CGTTTTT	4540	0.0	43.56278	1
TTTGTCG	65	0.0	41.53846	1
CGGGTAC	60	3.6379788E-12	41.250004	6
GCGATCT	95	0.0	40.263157	9
GCTACGA	95	0.0	40.263157	10
AGCTACG	95	0.0	40.263157	9
TGGGCGA	605	0.0	40.16529	6
CGATGCG	45	1.9228537E-8	40.0	10
AACACGT	175	0.0	39.857143	41
AAACACG	195	0.0	39.23077	40
ACACGCG	495	0.0	39.090908	36
TTTGGGC	1135	0.0	39.052868	4
CACGTGA	180	0.0	38.75	43
TTACGGG	70	0.0	38.571426	3
TTGGGAT	605	0.0	38.305786	5