SRR2933598.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933598.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	241018
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10613	4.403405554771843	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCC	1228	0.5095055141109792	No Hit
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT	652	0.2705192143325395	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGC	627	0.2601465450713225	No Hit
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	530	0.2199005883378005	No Hit
GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	406	0.16845214880216416	No Hit
TCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	365	0.15144097121376826	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	266	0.11036520093934893	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	254	0.10538631969396477	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATGGGAC	35	1.2065902E-7	45.000004	5
CTGTCGG	35	1.2065902E-7	45.000004	2
CGCGGGA	45	3.8198777E-10	45.000004	4
GCGCGAC	35	1.2065902E-7	45.000004	9
CGGGAGG	45	3.8198777E-10	45.000004	6
CGGGTCC	20	7.0221827E-4	45.0	6
CGTGGCA	25	3.881604E-5	45.0	15
TCTTGCG	40	6.7757355E-9	45.0	1
CCGGGAG	20	7.0221827E-4	45.0	5
ACACGCT	20	7.0221827E-4	45.0	42
GGCACGT	25	3.881604E-5	45.0	11
TTGCTCG	20	7.0221827E-4	45.0	1
GGGTACG	25	3.881604E-5	45.0	7
GGCAACG	25	3.881604E-5	45.0	8
GCACGTG	25	3.881604E-5	45.0	12
TACGGGG	20	7.0221827E-4	45.0	4
TACGGGA	20	7.0221827E-4	45.0	4
ACGGGGG	20	7.0221827E-4	45.0	5
AGGCACG	25	3.881604E-5	45.0	10
GCGGGTC	20	7.0221827E-4	45.0	5