SRR2933597.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933597.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	241151
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10469	4.341263357813154	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCC	1275	0.5287143739814473	No Hit
CTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGCT	699	0.28985988032394644	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGC	678	0.2811516435760167	No Hit
CCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	548	0.22724351132692797	No Hit
TCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	431	0.17872619230274805	No Hit
GCTGTCTCTTATACACATCTGACGCTGTTCGGATCGTATGCCGTCTTCTGC	396	0.16421246438953188	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	256	0.10615755273666706	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTGGACC	30	2.1583455E-6	45.000004	5
ATTCGAG	30	2.1583455E-6	45.000004	14
TACGGGA	30	2.1583455E-6	45.000004	4
GCTTGCG	30	2.1583455E-6	45.000004	1
GCCCTAC	30	2.1583455E-6	45.000004	26
GCGATCG	30	2.1583455E-6	45.000004	9
CACAAAT	30	2.1583455E-6	45.000004	32
TTCGAGC	30	2.1583455E-6	45.000004	15
AGCAACG	25	3.8816113E-5	45.0	10
TCGCATT	25	3.8816113E-5	45.0	22
CACGGGA	40	6.7757355E-9	45.0	4
ACGGGAG	45	3.8198777E-10	45.0	5
ACGGGAA	20	7.022192E-4	45.0	5
TATTCGG	20	7.022192E-4	45.0	2
TTGCGGT	20	7.022192E-4	45.0	3
AGCTCGC	25	3.8816113E-5	45.0	19
TTGTTCG	25	3.8816113E-5	45.0	1
GGCGATA	25	3.8816113E-5	45.0	8
GCTCGCA	25	3.8816113E-5	45.0	20
CGATCTG	25	3.8816113E-5	45.0	10