SRR2933594.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933594.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	49801
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2034	4.084255336238228	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCC	213	0.42770225497479974	No Hit
CCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	210	0.4216782795526194	TruSeq Adapter, Index 15 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGCT	164	0.32931065641252183	TruSeq Adapter, Index 14 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	99	0.19879118893194914	TruSeq Adapter, Index 15 (95% over 23bp)
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	96	0.1927672135097689	No Hit
TCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGCCGTCTTCTGC	94	0.18875122989498203	TruSeq Adapter, Index 15 (95% over 23bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGCAGTATCGTATGC	73	0.14658340193972008	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	72	0.14457541013232666	No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	63	0.1265034838657858	No Hit
GGGACTGTCTAGGGCCTGTCTCTTATACACATCTGACGCGTGCAGTATCGT	52	0.10441557398445814	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGGGCT	20	6.968403E-4	45.000004	5
ATGGGAC	20	6.968403E-4	45.000004	5
TCCCAAG	20	6.968403E-4	45.000004	16
GGACCGA	20	6.968403E-4	45.000004	8
ATTGGGA	20	6.968403E-4	45.000004	4
CAACATG	20	6.968403E-4	45.000004	30
ACTCCGG	20	6.968403E-4	45.000004	30
AACCCGA	20	6.968403E-4	45.000004	24
GCAACCC	20	6.968403E-4	45.000004	22
GTGGGAC	20	6.968403E-4	45.000004	5
CGGGATG	20	6.968403E-4	45.000004	6
GCATGGG	20	6.968403E-4	45.000004	3
TGGGTAT	20	6.968403E-4	45.000004	6
GTGCGGG	20	6.968403E-4	45.000004	3
CGGTCGG	20	6.968403E-4	45.000004	1
TGGGAAG	20	6.968403E-4	45.000004	6
CCGACTC	20	6.968403E-4	45.000004	27
GACTCCG	20	6.968403E-4	45.000004	29
TTCGGGC	20	6.968403E-4	45.000004	4
GCCCTTG	20	6.968403E-4	45.000004	1