##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933592.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 60634 Sequences flagged as poor quality 0 Sequence length 51 %GC 36 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.08221459906983 33.0 31.0 34.0 30.0 34.0 2 32.310386911633735 34.0 31.0 34.0 30.0 34.0 3 32.331958966916254 33.0 31.0 34.0 30.0 34.0 4 35.949351848797704 37.0 35.0 37.0 35.0 37.0 5 35.983095293069894 37.0 35.0 37.0 35.0 37.0 6 35.974354322657256 37.0 35.0 37.0 35.0 37.0 7 36.02299040142494 37.0 35.0 37.0 35.0 37.0 8 35.856400699277636 37.0 35.0 37.0 35.0 37.0 9 37.68413761256061 39.0 38.0 39.0 35.0 39.0 10 37.2387439390441 39.0 37.0 39.0 34.0 39.0 11 37.24466470956889 39.0 37.0 39.0 34.0 39.0 12 37.30834185440512 39.0 37.0 39.0 34.0 39.0 13 37.21745225451067 39.0 37.0 39.0 34.0 39.0 14 38.407708546360126 40.0 38.0 41.0 34.0 41.0 15 38.436603225912854 40.0 38.0 41.0 34.0 41.0 16 38.4996536596629 40.0 38.0 41.0 34.0 41.0 17 38.488240920935446 40.0 38.0 41.0 34.0 41.0 18 37.97757034007323 39.0 38.0 40.0 34.0 41.0 19 37.3960319292806 37.0 37.0 40.0 34.0 41.0 20 36.71108618926675 37.0 35.0 40.0 33.0 41.0 21 36.58454002704753 37.0 35.0 40.0 33.0 41.0 22 36.57263251640993 37.0 35.0 40.0 33.0 41.0 23 36.54169277962859 37.0 35.0 40.0 33.0 41.0 24 36.41188112280239 37.0 35.0 40.0 33.0 41.0 25 36.32330045848864 37.0 35.0 40.0 33.0 41.0 26 36.22271332915526 36.0 35.0 40.0 33.0 41.0 27 36.11176897450275 36.0 35.0 40.0 32.0 41.0 28 35.94414025134413 36.0 35.0 40.0 32.0 41.0 29 35.796483820958535 36.0 35.0 40.0 31.0 41.0 30 35.47991226044793 36.0 35.0 40.0 30.0 41.0 31 34.98354058778903 36.0 35.0 40.0 27.0 41.0 32 34.31152488702708 36.0 34.0 40.0 22.0 41.0 33 33.5489989115018 36.0 33.0 40.0 18.0 41.0 34 32.949153940033646 36.0 33.0 40.0 12.0 41.0 35 32.47390902793812 36.0 32.0 40.0 10.0 41.0 36 32.09898736682389 35.0 31.0 40.0 10.0 41.0 37 31.78813866807402 35.0 30.0 40.0 9.0 41.0 38 31.70533034271201 35.0 30.0 40.0 8.0 41.0 39 31.59257182438896 35.0 30.0 40.0 8.0 41.0 40 31.355938912161495 35.0 29.0 40.0 8.0 41.0 41 31.116502292443183 35.0 28.0 40.0 8.0 41.0 42 30.934426229508198 35.0 27.0 40.0 7.0 41.0 43 30.689959428703368 35.0 26.0 39.0 7.0 41.0 44 30.511346769139426 35.0 25.0 39.0 7.0 41.0 45 30.581142593264506 35.0 25.0 39.0 7.0 41.0 46 30.336725269650692 35.0 24.0 39.0 7.0 41.0 47 30.129514793680112 35.0 23.0 39.0 7.0 41.0 48 29.980374047564073 35.0 23.0 39.0 7.0 41.0 49 30.062753570603952 35.0 24.0 39.0 7.0 41.0 50 29.96863146089653 35.0 24.0 39.0 7.0 41.0 51 28.997212784906157 35.0 22.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 1.0 12 1.0 13 1.0 14 3.0 15 7.0 16 9.0 17 17.0 18 32.0 19 55.0 20 125.0 21 192.0 22 281.0 23 512.0 24 907.0 25 1673.0 26 2417.0 27 2647.0 28 2384.0 29 2057.0 30 1899.0 31 1948.0 32 2055.0 33 2414.0 34 3431.0 35 5303.0 36 6560.0 37 6920.0 38 9939.0 39 6839.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.679288847841143 4.932875944189728 34.40149091268925 41.98634429527988 2 47.13362140053435 4.325955734406438 33.82920473661642 14.711218128442788 3 16.03390836824224 5.112643071544018 63.61117524821057 15.242273312003165 4 12.710690371738629 4.9592637793976975 63.74971138305241 18.58033446581126 5 10.251673978296004 5.650295213906389 65.6331431210212 18.464887686776397 6 14.061417686446548 6.059306659629911 68.89369000890589 10.985585645017647 7 53.51617904146189 2.6074479664874493 39.39538872579741 4.480984266253257 8 52.16215324735297 3.03460104891645 39.09357786060626 5.70966784312432 9 47.85598838935251 5.1555233037569685 41.09080713790942 5.8976811689811 10 23.10254972457697 17.620476960121383 45.86040835174984 13.416564963551803 11 15.525942540488835 15.895372233400401 50.45519015733747 18.123495068773295 12 14.70956888874229 12.700794933535638 55.56783322888148 17.021802948840584 13 17.058086222251543 14.490220008576046 56.56067552858133 11.891018240591087 14 14.354982353135204 16.779364712867366 54.853712438565815 14.011940495431608 15 10.396807071939836 15.201042319490716 57.50568987696671 16.89646073160273 16 10.10159316555068 15.017976712735429 54.83722004156084 20.04321008015305 17 10.860243427779794 14.757396840056733 52.9076095919781 21.474750140185375 18 11.450671240558103 13.720025068443448 56.09558993304087 18.73371375795758 19 11.851436487779134 16.04215456674473 56.615100438697766 15.491308506778376 20 12.62492990731273 18.684236566942637 53.96642147969786 14.724412046046773 21 11.869578124484613 19.24003034601049 54.16597948345812 14.724412046046773 22 9.852557970775473 18.01134676913943 52.18194412375895 19.954151136326153 23 10.124682521357654 19.10974040967114 50.22759507866873 20.53798199030247 24 11.20493452518389 18.17956921859023 50.69597915361018 19.919517102615693 25 10.678827060725006 20.114127387274465 48.675660520500045 20.53138503150048 26 10.492462974568724 20.321931589537222 50.87409704126398 18.311508394630074 27 11.406141768644655 19.65069103143451 52.08134050202856 16.861826697892273 28 10.619454431507075 16.69525348814197 52.09453441963255 20.59075766071841 29 13.734868225747931 15.29175050301811 51.09674440083122 19.876636870402745 30 16.52868027839166 17.51327637958901 49.61902562918495 16.339017712834384 31 15.895372233400401 22.42141372827127 43.73453837780783 17.9486756605205 32 15.680971072335653 22.49562951479368 42.48606392453079 19.337335488339875 33 17.152092885179933 19.185605435894054 42.42998977471385 21.23231190421216 34 17.841475079988125 19.517102615694164 40.54161031764357 22.09981198667414 35 20.815054259986145 20.140515222482435 38.61529834746182 20.429132170069597 36 20.735890754362238 20.97503051093446 41.55424349374938 16.73483524095392 37 17.909093907708545 22.07672263086717 40.498730085430616 19.515453375993665 38 20.325230068938218 21.398885113962464 37.195302965332985 21.080581851766336 39 22.18722169080054 19.987135930336112 40.088069400006596 17.737572978856747 40 19.437939110070257 23.68308209915229 40.41956657980671 16.459412210970743 41 18.11195039086981 27.921628129432328 36.46139129861134 17.50503018108652 42 22.06847643236468 23.805125836989145 36.69228485668107 17.434112873965102 43 22.622620971732033 18.844212817890952 40.22990401424943 18.303262196127584 44 19.45443150707524 18.10865191146881 39.70874426889204 22.728172312563906 45 21.807896559685986 17.88930303130257 38.40749414519906 21.895306263812383 46 21.252102780618134 20.34996866444569 41.560840452551375 16.8370881023848 47 16.215324735297028 24.202592604809183 42.43163901441436 17.150443645479434 48 17.44565755186859 21.822739716990466 42.67242801068708 18.05917472045387 49 20.92225484051852 17.072929379556022 44.057789359105456 17.947026420820002 50 19.089949533265166 16.19553385889105 41.11884421281789 23.595672395025893 51 16.69525348814197 16.96737803872415 38.435531220107535 27.901837253026358 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 206.0 1 330.0 2 454.0 3 4037.0 4 7620.0 5 4661.0 6 1702.0 7 1588.0 8 1474.0 9 1449.0 10 1424.0 11 1389.0 12 1354.0 13 1270.5 14 1187.0 15 1099.5 16 1012.0 17 925.0 18 838.0 19 750.0 20 662.0 21 591.5 22 521.0 23 454.0 24 387.0 25 385.0 26 396.5 27 410.0 28 421.5 29 433.0 30 465.5 31 498.0 32 501.0 33 504.0 34 553.0 35 602.0 36 678.0 37 754.0 38 797.0 39 840.0 40 1148.5 41 1457.0 42 1892.0 43 2327.0 44 2720.5 45 3114.0 46 3953.5 47 4793.0 48 5797.5 49 6802.0 50 6707.0 51 6612.0 52 5448.0 53 4284.0 54 3296.0 55 2308.0 56 1851.0 57 1394.0 58 1219.5 59 1045.0 60 911.0 61 777.0 62 731.0 63 685.0 64 620.0 65 555.0 66 469.0 67 383.0 68 317.5 69 252.0 70 219.5 71 187.0 72 178.5 73 170.0 74 132.5 75 76.5 76 58.0 77 45.0 78 32.0 79 23.0 80 14.0 81 13.0 82 12.0 83 9.5 84 7.0 85 4.5 86 2.0 87 1.0 88 0.0 89 2.0 90 4.0 91 2.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 60634.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 61.23132236039186 #Duplication Level Percentage of deduplicated Percentage of total 1 81.49055943114175 49.89774713856912 2 10.270153796428476 12.577101955998286 3 3.88396584695774 7.134610944354653 4 1.6672502491448273 4.083517498433222 5 0.8834540900153527 2.7047531088168353 6 0.44442050259918653 1.6327473034930897 7 0.2881999622915937 1.2352805356730547 8 0.19123548899722573 0.936768149882904 9 0.18315511622269506 1.0093346967048191 >10 0.6383494491879226 6.4056469967345055 >50 0.03501494868963288 1.360622752910908 >100 0.021547660732081773 2.736088663126299 >500 0.0 0.0 >1k 0.0 0.0 >5k 0.0026934575915102217 8.285780255302305 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5024 8.285780255302305 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCC 386 0.6366065243922552 No Hit CTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGCT 260 0.4288023221294983 No Hit CCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC 224 0.3694296929115678 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGC 205 0.3380941386021044 No Hit TCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC 182 0.30016162549064884 No Hit GCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTGC 158 0.26057987267869515 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 137 0.22594583896823564 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 107 0.17646864795329353 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 95 0.15667777154731669 No Hit TTTTTTGGGGTTTTAAGGCTGTCTCTTATACACATCTGACGCGTCGTAAGT 76 0.12534221723785335 No Hit CGCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG 68 0.11214829963386878 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 66 0.10884982023287265 No Hit TCCTGTCTCTTATACACATCTGACGCGTCGTAAGTCGTATGCCGTCTTCTG 63 0.10390210113137843 No Hit TTTAATCCCCTGTCCTAGGCCTGTCTCTTATACACATCTGACGCGTCGTAA 62 0.10225286143088037 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 62 0.10225286143088037 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.45354091763696935 0.0 2 0.0 0.0 0.0 1.5156512847577266 0.0 3 0.0 0.0 0.0 2.1852426031599435 0.0 4 0.0 0.0 0.0 3.0857274796318896 0.0 5 0.0 0.0 0.0 4.957614539697199 0.0 6 0.0 0.0 0.0 6.362766764521556 0.0 7 0.0 0.0 0.0 7.711844839528977 0.0 8 0.0 0.0 0.0 9.689283240426164 0.0 9 0.0 0.0 0.0 10.517201570076194 0.0 10 0.0 0.0 0.0 12.684302536530659 0.0 11 0.0 0.0 0.0 17.90414618860705 0.0 12 0.0 0.0 0.0 22.635814889336014 0.0 13 0.0 0.0 0.0 24.09539202427681 0.0 14 0.0 0.0 0.0 24.63304416663918 0.0 15 0.0 0.0 0.0 25.355411155457332 0.0 16 0.0 0.0 0.0 27.318006399050038 0.0 17 0.0 0.0 0.0 29.643434376752317 0.0 18 0.0 0.0 0.0 31.89794504733318 0.0 19 0.0 0.0 0.0 33.23217996503612 0.0 20 0.0 0.0 0.0 34.23821618233994 0.0 21 0.0 0.0 0.0 35.71758419368671 0.0 22 0.0 0.0 0.0 36.804433156314936 0.0 23 0.0 0.0 0.0 37.55153874064057 0.0 24 0.0 0.0 0.0 38.02157205528251 0.0 25 0.0 0.0 0.0 38.303592044067685 0.0 26 0.0 0.0 0.0 38.52953788303592 0.0 27 0.0 0.0 0.0 38.7175512088927 0.0 28 0.0 0.0 0.0 38.890721377445 0.0 29 0.0 0.0 0.0 39.11171949731174 0.0 30 0.0 0.0 0.0 39.28324042616354 0.0 31 0.0 0.0 0.0 39.44486591681235 0.0 32 0.0 0.0 0.0 39.59164825015668 0.0 33 0.0 0.0 0.0 39.731833624699014 0.0 34 0.0 0.0 0.0 39.87036975954085 0.0 35 0.0 0.0 0.0 39.989115017976715 0.0 36 0.0 0.0 0.0 40.096315598509086 0.0 37 0.0 0.0 0.0 40.203516179041465 0.0 38 0.0 0.0 0.0 40.337104594781806 0.0 39 0.0 0.0 0.0 40.46244681201966 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATGGGGC 20 6.980461E-4 45.0 5 GTGTTGG 25 3.8470866E-5 45.0 2 GTTCTTG 20 6.980461E-4 45.0 1 TCTTGCG 20 6.980461E-4 45.0 1 TCGTTGG 20 6.980461E-4 45.0 2 GCATGGG 25 3.8470866E-5 45.0 3 GTGATAT 25 3.8470866E-5 45.0 1 CTTGCGG 20 6.980461E-4 45.0 2 TGGGCGA 25 3.8470866E-5 45.0 6 CTTCGGG 25 3.8470866E-5 45.0 3 GCTCCTG 25 3.8470866E-5 45.0 1 CGTTGGG 25 3.8470866E-5 45.0 3 TGGGACC 45 3.7289283E-10 45.0 6 TACTTGG 20 6.980461E-4 45.0 2 TATGGGC 20 6.980461E-4 45.0 4 TCGGGCT 20 6.980461E-4 45.0 5 CATGGGT 30 2.13153E-6 44.999996 4 CGTTTTT 1835 0.0 44.509537 1 TTGGGAT 115 0.0 41.08696 5 TCTGGGA 55 5.820766E-11 40.909092 4 >>END_MODULE