SRR2933589.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933589.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	214486
Sequences flagged as poor quality	0
Sequence length	51
%GC	44

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	7414	3.4566358643454587	No Hit
GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAA	486	0.22658821554786793	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCC	463	0.21586490493552024	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	366	0.1706405080051845	No Hit
GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCAT	328	0.1529237339500014	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	288	0.13427449810244024	No Hit
CCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGCCGTCTTCTGC	268	0.12494988017865968	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTATCGCGATCGTATGC	232	0.10816556791585465	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAACGA	20	7.020444E-4	45.0	22
ATCTACC	35	1.2057535E-7	45.0	15
AACCCGA	20	7.020444E-4	45.0	24
CGCATGG	25	3.880164E-5	45.0	2
CCGTGGC	25	3.880164E-5	45.0	26
CAACCCG	20	7.020444E-4	45.0	23
GGATCGT	20	7.020444E-4	45.0	8
ATCAACC	25	3.880164E-5	45.0	10
GCATTCC	20	7.020444E-4	45.0	12
TACGAAT	70	0.0	45.0	12
CGAATAT	70	0.0	45.0	14
GCTACGA	70	0.0	45.0	10
CCAGTAG	55	1.8189894E-12	45.0	26
AAGCTAC	70	0.0	45.0	8
CGTTTTT	2980	0.0	43.489933	1
TGGGATC	150	0.0	42.000004	6
CCTATGC	75	0.0	42.000004	35
AGCTACG	75	0.0	42.000004	9
ATACTAT	65	0.0	41.538464	45
TAGCATA	60	3.6379788E-12	41.249996	30