SRR2933587.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933587.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	87936
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base sequence quality

Per base quality graph

Per sequence quality scores

Per Sequence quality graph

Per base sequence content

Per sequence GC content

Per sequence GC content graph

Per base N content

N content graph

Sequence Length Distribution

Sequence length distribution

Sequence Duplication Levels

Duplication level graph

Overrepresented sequences

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4278	4.8649017467248905	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC	2244	2.5518558951965065	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG	2108	2.397197962154294	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC	1550	1.7626455604075693	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTCTGTT	594	0.6754912663755459	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCC	526	0.5981622998544396	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTA	479	0.5447143377001455	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCT	469	0.5333424308588064	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	454	0.5162845705967977	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	425	0.4833060407569141	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTC	398	0.4526018922852984	No Hit
CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT	351	0.39915393013100436	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC	284	0.322962154294032	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC	245	0.27861171761280934	No Hit
GAACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCT	230	0.2615538573508006	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGT	190	0.21606622998544397	No Hit
TCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG	163	0.18536208151382824	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATG	158	0.17967612809315867	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTT	128	0.1455604075691412	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTAT	120	0.13646288209606985	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	115	0.1307769286754003	No Hit
TTCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCT	107	0.12167940320232896	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG	100	0.11371906841339155	No Hit
GAATGATCCGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC	99	0.11258187772925765	No Hit
GCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG	94	0.10689592430858806	No Hit
GAATGATCCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG	90	0.1023471615720524	No Hit

Adapter Content

Adapter graph

Kmer Content

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGATTT	20	6.9977494E-4	45.000004	9
CCGCACT	20	6.9977494E-4	45.000004	34
GATGAAT	120	0.0	45.000004	20
GCTACGG	20	6.9977494E-4	45.000004	5
TCTGTTG	20	6.9977494E-4	45.000004	1
CCCGCAC	20	6.9977494E-4	45.000004	33
CGGGATT	20	6.9977494E-4	45.000004	6
GCATGGG	40	6.692062E-9	45.000004	3
TGCTACG	20	6.9977494E-4	45.000004	4
CTACGGC	20	6.9977494E-4	45.000004	6
TGGGTAC	30	2.1426222E-6	45.000004	6
GTTGGGT	20	6.9977494E-4	45.000004	4
GGGAACT	30	2.1426222E-6	45.000004	7
CGGTTTT	20	6.9977494E-4	45.000004	1
CGATGAA	120	0.0	45.000004	19
TAGGGAT	20	6.9977494E-4	45.000004	5
CGCACTT	20	6.9977494E-4	45.000004	35
AATGCTA	20	6.9977494E-4	45.000004	2
TTTATGG	20	6.9977494E-4	45.000004	2
TTCGGGA	20	6.9977494E-4	45.000004	4

Summary

Basic Statistics

Per base sequence quality

Per sequence quality scores

Per base sequence content

Per sequence GC content

Per base N content

Sequence Length Distribution

Sequence Duplication Levels

Overrepresented sequences

Adapter Content

Kmer Content