##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933587.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 87936 Sequences flagged as poor quality 0 Sequence length 51 %GC 41 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.704489628820962 33.0 31.0 34.0 30.0 34.0 2 31.842772016011644 33.0 31.0 34.0 30.0 34.0 3 31.97697188864629 33.0 31.0 34.0 30.0 34.0 4 35.71646424672489 37.0 35.0 37.0 35.0 37.0 5 35.77247088791849 37.0 35.0 37.0 35.0 37.0 6 35.58235534934498 37.0 35.0 37.0 33.0 37.0 7 35.70528566229986 37.0 35.0 37.0 35.0 37.0 8 35.285014101164485 37.0 35.0 37.0 32.0 37.0 9 37.26545442139738 39.0 37.0 39.0 34.0 39.0 10 36.987320323871906 39.0 37.0 39.0 33.0 39.0 11 37.00071643013101 39.0 37.0 39.0 33.0 39.0 12 37.000659570596795 39.0 37.0 39.0 33.0 39.0 13 36.8856441048035 39.0 37.0 39.0 33.0 39.0 14 37.93586244541485 40.0 37.0 41.0 33.0 41.0 15 37.91300491266376 40.0 37.0 41.0 33.0 41.0 16 38.13158433406114 40.0 37.0 41.0 33.0 41.0 17 38.06215884279476 40.0 37.0 41.0 33.0 41.0 18 37.877513191411936 39.0 37.0 40.0 33.0 41.0 19 37.60120997088792 39.0 37.0 40.0 34.0 41.0 20 36.90212199781659 38.0 35.0 40.0 32.0 41.0 21 36.915131459243085 38.0 35.0 40.0 33.0 41.0 22 36.9735375727802 38.0 35.0 40.0 33.0 41.0 23 36.731213609898106 38.0 35.0 40.0 32.0 41.0 24 36.71372361717613 38.0 35.0 40.0 32.0 41.0 25 36.622566411935956 38.0 35.0 40.0 32.0 41.0 26 36.619507368995635 38.0 35.0 40.0 32.0 41.0 27 36.50644787117904 38.0 35.0 40.0 32.0 41.0 28 36.52709925400291 38.0 35.0 40.0 32.0 41.0 29 36.31809497816594 38.0 35.0 40.0 31.0 41.0 30 36.17139737991266 38.0 35.0 40.0 31.0 41.0 31 35.91566593886463 38.0 35.0 40.0 30.0 41.0 32 35.42032842066958 38.0 35.0 40.0 27.0 41.0 33 34.94516466521106 38.0 35.0 40.0 23.0 41.0 34 34.54821688500728 38.0 35.0 40.0 21.0 41.0 35 34.28942640101892 38.0 34.0 40.0 18.0 41.0 36 34.0064933588064 38.0 34.0 40.0 17.0 41.0 37 33.92043076783115 38.0 34.0 40.0 15.0 41.0 38 33.941741721251816 38.0 34.0 40.0 15.0 41.0 39 33.8841316411936 38.0 34.0 40.0 15.0 41.0 40 33.845398926491995 38.0 33.0 40.0 15.0 41.0 41 33.55302720160117 38.0 33.0 40.0 15.0 41.0 42 33.377774745269285 38.0 33.0 40.0 13.0 41.0 43 33.19999772561863 38.0 33.0 40.0 12.0 41.0 44 33.16682587336245 37.0 33.0 40.0 12.0 41.0 45 33.246429221251816 37.0 33.0 40.0 13.0 41.0 46 32.97769969068413 37.0 32.0 40.0 12.0 41.0 47 32.82610080058224 37.0 32.0 40.0 10.0 41.0 48 32.80788300582242 37.0 32.0 40.0 11.0 41.0 49 32.88350618631732 37.0 32.0 40.0 10.0 41.0 50 32.63449554221252 37.0 31.0 40.0 10.0 41.0 51 31.799547398107716 35.0 30.0 39.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 0.0 13 3.0 14 1.0 15 6.0 16 12.0 17 15.0 18 37.0 19 77.0 20 141.0 21 253.0 22 485.0 23 707.0 24 1028.0 25 1557.0 26 2205.0 27 2387.0 28 2386.0 29 2305.0 30 2381.0 31 2505.0 32 2928.0 33 3618.0 34 5183.0 35 7033.0 36 8622.0 37 10019.0 38 16929.0 39 15108.0 40 3.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 31.687818413391554 4.259916302765648 34.33974708879185 29.712518195050947 2 34.62290756914119 17.26937772925764 33.7245269286754 14.383187772925766 3 15.174672489082969 17.636690320232898 51.3680403930131 15.820596797671033 4 12.944641557496361 4.502137918486172 64.20123726346434 18.35198326055313 5 22.255958879184863 5.15488537117904 53.063591703056765 19.52556404657933 6 14.949508733624453 16.83383369723435 56.99372270742358 11.222934861717611 7 54.21329148471615 2.253911935953421 38.33924672489083 5.193549854439593 8 51.38509825327511 12.195232896652112 29.05635917030568 7.363309679767103 9 47.36399199417758 3.9801673944687046 30.39596979621543 18.25987081513828 10 31.793577147016013 15.73530749636099 36.35030021834061 16.12081513828239 11 23.20210152838428 14.454830786026202 41.22316229985444 21.11990538573508 12 17.368313318777293 12.001910480349345 46.53384279475983 24.095933406113538 13 20.705967976710333 14.007914847161572 51.82860262008734 13.457514556040756 14 16.8656750363901 20.770787845705968 43.929676128093156 18.43386098981077 15 10.730531295487628 15.076874090247452 53.11476528384279 21.077829330422126 16 10.575873362445416 16.457423580786028 43.74886280931587 29.217840247452692 17 10.970478529839884 18.28830058224163 46.44173034934498 24.299490538573508 18 11.601619359534206 15.900200145560408 48.07359898107715 24.42458151382824 19 11.799490538573508 19.15370269286754 46.761280931586604 22.285525836972344 20 14.332014192139738 20.458060407569143 48.88896470160116 16.32096069868996 21 12.978757278020378 26.368040393013096 44.09911754002911 16.55408478893741 22 10.426901382823871 18.641966885007278 46.23931040756914 24.691821324599708 23 12.348753639010189 24.058406113537117 41.32550946142649 22.2673307860262 24 14.12049672489083 20.166939592430857 40.07232532751092 25.640238355167394 25 10.8738173216885 28.783433406113534 37.427219796215425 22.91552947598253 26 11.036435589519652 22.284388646288207 43.181404657933044 23.497771106259098 27 16.519969068413392 22.797261644832606 39.682268922852984 21.00050036390102 28 10.479212154294032 21.325736899563317 44.295851528384276 23.89919941775837 29 15.302037845705968 19.152565502183407 40.996861353711786 24.548535298398836 30 18.838700873362445 23.73885553129549 38.375636826783115 19.04680676855895 31 18.406568413391557 21.608897379912666 33.38450691411936 26.600027292576417 32 19.675673216885006 24.888555312954878 34.09411390101892 21.34165756914119 33 18.93536208151383 16.76560225618632 33.07973981077147 31.219295851528383 34 18.777292576419214 20.302265283842793 35.53266011644833 25.387782023289667 35 22.510689592430857 20.27497270742358 32.87504548762736 24.339292212518195 36 20.203329694323145 24.176673944687042 32.62258915574964 22.997407205240176 37 22.03420669577875 18.25418486171761 38.642876637554586 21.068731804949053 38 17.95396652110626 17.21934133915575 33.4561499272198 31.370542212518192 39 17.99490538573508 17.209106622998544 41.629139374090244 23.16684861717613 40 21.028930131004365 16.22316229985444 37.001910480349345 25.74599708879185 41 21.19041120815138 19.17417212518195 37.901428311499274 21.733988355167394 42 23.982214337700146 16.938455240174672 39.556040756914115 19.523289665211063 43 19.70524017467249 16.699645196506548 40.24745269286754 23.347661935953422 44 20.27497270742358 15.279294032023289 38.46774927219796 25.97798398835517 45 20.28634461426492 13.664483260553128 35.87836608442503 30.170806040756915 46 25.7107441775837 17.445642285298398 37.613719068413396 19.22989446870451 47 16.274335880640468 18.038118631732168 46.0903384279476 19.597207059679768 48 18.64537845705968 18.580558588064047 40.67617358078602 22.097889374090247 49 20.67753820960699 12.699008369723435 45.036162663755455 21.58729075691412 50 21.229075691411936 11.840429403202329 39.867631004366814 27.062863901018925 51 19.259461426491995 12.481804949053856 35.435998908296945 32.82273471615721 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 176.0 1 345.0 2 514.0 3 3697.0 4 6880.0 5 4188.5 6 1497.0 7 1446.5 8 1396.0 9 1289.5 10 1183.0 11 1141.0 12 1099.0 13 1017.0 14 935.0 15 870.5 16 806.0 17 707.0 18 608.0 19 579.0 20 550.0 21 499.5 22 449.0 23 427.5 24 406.0 25 386.5 26 368.5 27 370.0 28 394.0 29 418.0 30 456.0 31 494.0 32 559.5 33 625.0 34 708.0 35 791.0 36 895.0 37 999.0 38 1111.5 39 1224.0 40 1577.5 41 1931.0 42 2502.0 43 3073.0 44 3713.0 45 4353.0 46 9642.5 47 14932.0 48 13298.0 49 11664.0 50 10991.5 51 10319.0 52 8303.5 53 6288.0 54 4947.0 55 3606.0 56 2985.5 57 2365.0 58 2131.5 59 1898.0 60 1719.0 61 1540.0 62 1365.5 63 1191.0 64 1035.5 65 880.0 66 771.5 67 663.0 68 593.5 69 524.0 70 450.0 71 376.0 72 313.5 73 251.0 74 199.5 75 106.0 76 64.0 77 53.0 78 42.0 79 32.5 80 23.0 81 18.0 82 13.0 83 8.0 84 3.0 85 1.5 86 0.0 87 1.0 88 2.0 89 1.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 87936.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 53.28989264919942 #Duplication Level Percentage of deduplicated Percentage of total 1 78.96971895606154 42.08287845705968 2 11.237489596892939 11.9768922852984 3 4.57736710697595 7.317822052401747 4 2.1275687672051387 4.535116448326056 5 0.9773585710932332 2.604166666666667 6 0.5591003179616312 1.7876637554585153 7 0.2923539830562728 1.090565866084425 8 0.2262008919997439 0.9643377001455604 9 0.17071765433942937 0.8187772925764192 >10 0.7618275324897036 7.1517922125181945 >50 0.053349266981071675 1.9116175400291122 >100 0.03414353086788587 4.90811499272198 >500 0.004267941358485734 1.2736535662299855 >1k 0.008535882716971468 11.576601164483261 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4278 4.8649017467248905 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC 2244 2.5518558951965065 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG 2108 2.397197962154294 No Hit GAATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTC 1550 1.7626455604075693 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGCTCTGTT 594 0.6754912663755459 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCC 526 0.5981622998544396 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTA 479 0.5447143377001455 No Hit GAATGACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCT 469 0.5333424308588064 No Hit GCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC 454 0.5162845705967977 No Hit CCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC 425 0.4833060407569141 No Hit GAATGATCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTC 398 0.4526018922852984 No Hit CTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGCT 351 0.39915393013100436 Illumina Single End Adapter 1 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTGC 284 0.322962154294032 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC 245 0.27861171761280934 No Hit GAACTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCT 230 0.2615538573508006 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGT 190 0.21606622998544397 No Hit TCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG 163 0.18536208151382824 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATG 158 0.17967612809315867 No Hit GAATGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTT 128 0.1455604075691412 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTAT 120 0.13646288209606985 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 115 0.1307769286754003 No Hit TTCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCT 107 0.12167940320232896 No Hit CGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG 100 0.11371906841339155 No Hit GAATGATCCGGCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGC 99 0.11258187772925765 No Hit GCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCGTCTTCTG 94 0.10689592430858806 No Hit GAATGATCCCTGTCTCTTATACACATCTGACGCAGCTCTGTTCGTATGCCG 90 0.1023471615720524 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.42530931586608445 0.0 2 0.0 0.0 0.0 1.8547580058224162 0.0 3 0.0 0.0 0.0 2.692867540029112 0.0 4 0.0 0.0 0.0 3.9540120087336246 0.0 5 0.0 0.0 0.0 7.793167758369724 0.0 6 0.0 0.0 0.0 9.450054585152838 0.0 7 0.0 0.0 0.0 11.318458879184861 0.0 8 0.0 0.0 0.0 13.72247998544396 0.0 9 0.0 0.0 0.0 14.679994541484715 0.0 10 0.0 0.0 0.0 19.549445050946144 0.0 11 0.0 0.0 0.0 24.70091885007278 0.0 12 0.0 0.0 0.0 31.707150655021834 0.0 13 0.0 0.0 0.0 33.36176310043668 0.0 14 0.0 0.0 0.0 34.114583333333336 0.0 15 0.0 0.0 0.0 35.54971797671033 0.0 16 0.0 0.0 0.0 37.67512736535662 0.0 17 0.0 0.0 0.0 40.20992540029112 0.0 18 0.0 0.0 0.0 42.311453784570595 0.0 19 0.0 0.0 0.0 44.48348799126637 0.0 20 0.0 0.0 0.0 45.65593158660844 0.0 21 0.0 0.0 0.0 46.96711244541485 0.0 22 0.0 0.0 0.0 48.07814774381368 0.0 23 0.0 0.0 0.0 48.85143740902475 0.0 24 0.0 0.0 0.0 49.313136826783115 0.0 25 0.0 0.0 0.0 49.587199781659386 0.0 26 0.0 0.0 0.0 49.8157751091703 0.0 27 0.0 0.0 0.0 50.01137190684134 0.0 28 0.0 0.0 0.0 50.17512736535662 0.0 29 0.0 0.0 0.0 50.38778202328967 0.0 30 0.0 0.0 0.0 50.58110443959243 0.0 31 0.0011371906841339155 0.0 0.0 50.72552765647744 0.0 32 0.0011371906841339155 0.0 0.0 50.85061863173217 0.0 33 0.0011371906841339155 0.0 0.0 50.9859443231441 0.0 34 0.0011371906841339155 0.0 0.0 51.13036754002911 0.0 35 0.0011371906841339155 0.0 0.0 51.245223799126634 0.0 36 0.0011371906841339155 0.0 0.0 51.37372634643377 0.0 37 0.0011371906841339155 0.0 0.0 51.502228893740906 0.0 38 0.0011371906841339155 0.0 0.0 51.6330058224163 0.0 39 0.0011371906841339155 0.0 0.0 51.79221251819505 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GCGATTT 20 6.9977494E-4 45.000004 9 CCGCACT 20 6.9977494E-4 45.000004 34 GATGAAT 120 0.0 45.000004 20 GCTACGG 20 6.9977494E-4 45.000004 5 TCTGTTG 20 6.9977494E-4 45.000004 1 CCCGCAC 20 6.9977494E-4 45.000004 33 CGGGATT 20 6.9977494E-4 45.000004 6 GCATGGG 40 6.692062E-9 45.000004 3 TGCTACG 20 6.9977494E-4 45.000004 4 CTACGGC 20 6.9977494E-4 45.000004 6 TGGGTAC 30 2.1426222E-6 45.000004 6 GTTGGGT 20 6.9977494E-4 45.000004 4 GGGAACT 30 2.1426222E-6 45.000004 7 CGGTTTT 20 6.9977494E-4 45.000004 1 CGATGAA 120 0.0 45.000004 19 TAGGGAT 20 6.9977494E-4 45.000004 5 CGCACTT 20 6.9977494E-4 45.000004 35 AATGCTA 20 6.9977494E-4 45.000004 2 TTTATGG 20 6.9977494E-4 45.000004 2 TTCGGGA 20 6.9977494E-4 45.000004 4 >>END_MODULE