SRR2933586.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933586.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	449942
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	21655	4.8128425441501355	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCC	928	0.20624880540158508	No Hit
CTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGCT	537	0.11934871605673619	TruSeq Adapter, Index 20 (95% over 23bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGC	490	0.10890292526592317	No Hit
CCTGTCTCTTATACACATCTGACGCCTCACTACTCGTATGCCGTCTTCTGC	484	0.10756942005858533	TruSeq Adapter, Index 23 (95% over 22bp)

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACATACG	45	3.8380676E-10	45.000004	17
TACGCGG	20	7.0287054E-4	45.0	2
CTACGGG	30	2.1625456E-6	44.999996	3
CGTTTTT	11110	0.0	43.784874	1
TTGCTTG	305	0.0	40.57377	1
GTCGTTT	50	1.0786607E-9	40.5	9
CCCATTA	45	1.9237632E-8	40.000004	33
TCGTTTG	85	0.0	39.705883	1
GGCGATA	40	3.451969E-7	39.375	8
GTTTTTT	12625	0.0	39.297028	2
TATGCGG	35	6.239814E-6	38.57143	2
AGACACG	105	0.0	38.57143	24
TCAAGCG	105	0.0	38.57143	17
TTTGGGC	1085	0.0	38.15668	4
TGGGCGA	645	0.0	38.023254	6
ACACGTG	90	0.0	37.500004	42
ACGTGAG	90	0.0	37.500004	44
CACGTGA	90	0.0	37.500004	43
TGGGTAT	330	0.0	37.5	6
TGCGGGA	365	0.0	36.986298	4