SRR2933578.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933578.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	145220
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11435	7.874259743836936	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC	1006	0.692742046550062	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	725	0.499242528577331	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	685	0.4716981132075472	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	590	0.4062801267043107	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	587	0.40421429555157695	No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC	549	0.3780471009502823	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	277	0.19074507643575264	No Hit
TCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG	253	0.17421842721388237	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	202	0.13909929761740808	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG	172	0.11844098609007025	No Hit
TTCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	172	0.11844098609007025	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	170	0.11706376532158104	No Hit
GTGCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC	160	0.11017766147913512	No Hit
CGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG	152	0.10466877840517835	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA	148	0.10191433686819998	No Hit
GGCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	146	0.10053711609971079	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATAGG	20	7.0129195E-4	45.000004	2
ATGACGA	20	7.0129195E-4	45.000004	37
GGGTACT	20	7.0129195E-4	45.000004	7
CAACCCG	20	7.0129195E-4	45.000004	23
GGCCGAT	20	7.0129195E-4	45.000004	8
AGGGTCT	20	7.0129195E-4	45.000004	6
CGAAGGG	20	7.0129195E-4	45.000004	41
ACTCCGG	20	7.0129195E-4	45.000004	30
AACCCGA	20	7.0129195E-4	45.000004	24
TAGCATA	20	7.0129195E-4	45.000004	30
TCTATAG	20	7.0129195E-4	45.000004	1
GATGACG	20	7.0129195E-4	45.000004	36
GCAACCC	20	7.0129195E-4	45.000004	22
GCTATAG	20	7.0129195E-4	45.000004	9
CGGGTAC	20	7.0129195E-4	45.000004	6
TCGTTGG	20	7.0129195E-4	45.000004	2
TGCTATG	20	7.0129195E-4	45.000004	1
TGCTATA	20	7.0129195E-4	45.000004	8
GTAGGGT	20	7.0129195E-4	45.000004	4
GCACCGA	20	7.0129195E-4	45.000004	9