##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933578.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 145220 Sequences flagged as poor quality 0 Sequence length 51 %GC 39 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.901618234402974 33.0 31.0 34.0 30.0 34.0 2 32.11815176972869 33.0 31.0 34.0 30.0 34.0 3 32.19713538080154 33.0 31.0 34.0 30.0 34.0 4 35.846219528990495 37.0 35.0 37.0 35.0 37.0 5 35.87271037047239 37.0 35.0 37.0 35.0 37.0 6 35.85629389891199 37.0 35.0 37.0 35.0 37.0 7 35.90253408621402 37.0 35.0 37.0 35.0 37.0 8 35.71765597025203 37.0 35.0 37.0 35.0 37.0 9 37.52948629665335 39.0 37.0 39.0 35.0 39.0 10 37.04092411513566 39.0 37.0 39.0 33.0 39.0 11 37.10172841206445 39.0 37.0 39.0 33.0 39.0 12 37.13009227379149 39.0 37.0 39.0 34.0 39.0 13 37.02224900151494 39.0 37.0 39.0 33.0 39.0 14 38.00208648946426 40.0 37.0 41.0 33.0 41.0 15 38.05979203966396 40.0 37.0 41.0 33.0 41.0 16 38.15824266629941 40.0 37.0 41.0 33.0 41.0 17 38.16561079741083 40.0 37.0 41.0 33.0 41.0 18 37.79959371987329 39.0 37.0 40.0 33.0 41.0 19 37.3701005371161 38.0 37.0 40.0 33.0 41.0 20 36.75391130698251 38.0 35.0 40.0 33.0 41.0 21 36.61613414130285 37.0 35.0 40.0 32.0 41.0 22 36.66728412064454 38.0 35.0 40.0 33.0 41.0 23 36.63300509571685 38.0 35.0 40.0 33.0 41.0 24 36.49697700041317 37.0 35.0 40.0 32.0 41.0 25 36.38892714502135 37.0 35.0 40.0 32.0 41.0 26 36.39442225588762 37.0 35.0 40.0 32.0 41.0 27 36.32400495799477 37.0 35.0 40.0 32.0 41.0 28 36.194787219391266 37.0 35.0 40.0 32.0 41.0 29 36.11407519625396 37.0 35.0 40.0 31.0 41.0 30 35.95495110866272 37.0 35.0 40.0 31.0 41.0 31 35.567504475967496 37.0 35.0 40.0 30.0 41.0 32 35.11462608456136 37.0 35.0 40.0 27.0 41.0 33 34.57783363173117 37.0 34.0 40.0 22.0 41.0 34 34.08381765597025 38.0 34.0 40.0 18.0 41.0 35 33.67758573199284 37.0 33.0 40.0 15.0 41.0 36 33.42682137446633 37.0 33.0 40.0 15.0 41.0 37 33.21585869714915 37.0 33.0 40.0 12.0 41.0 38 33.10730615617683 37.0 33.0 40.0 12.0 41.0 39 33.0886448147638 37.0 33.0 40.0 10.0 41.0 40 32.930250654179865 37.0 33.0 40.0 10.0 41.0 41 32.709674975898636 37.0 32.0 40.0 10.0 41.0 42 32.520926869577195 37.0 31.0 40.0 10.0 41.0 43 32.32164991048065 36.0 31.0 40.0 10.0 41.0 44 32.21479135105358 36.0 31.0 40.0 10.0 41.0 45 32.20249965569481 36.0 31.0 40.0 10.0 41.0 46 31.89504200523344 36.0 31.0 40.0 10.0 41.0 47 31.667139512463848 35.0 30.0 40.0 10.0 41.0 48 31.61016388927145 35.0 29.0 39.0 8.0 41.0 49 31.674259743836938 35.0 30.0 39.0 8.0 41.0 50 31.573991185787083 35.0 30.0 39.0 8.0 41.0 51 30.499373364550337 35.0 26.0 39.0 8.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 2.0 12 8.0 13 3.0 14 2.0 15 5.0 16 10.0 17 31.0 18 73.0 19 118.0 20 219.0 21 324.0 22 564.0 23 848.0 24 1576.0 25 2953.0 26 4483.0 27 5027.0 28 4612.0 29 4385.0 30 4310.0 31 4670.0 32 5095.0 33 6178.0 34 8809.0 35 12499.0 36 15696.0 37 17109.0 38 26724.0 39 18884.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 20.791213331497037 4.364412615342239 37.833631731166506 37.010742321994215 2 42.74411238121471 4.498691640269936 36.16994904283157 16.58724693568379 3 17.158104944222558 4.708029197080292 60.97507230409035 17.158793554606802 4 13.639994491116928 4.834733507781298 60.90483404489739 20.62043795620438 5 11.010880044071063 6.026029472524446 62.55336730477895 20.409723178625534 6 15.28783914061424 6.762153973281918 65.33741908827984 12.61258779782399 7 56.671946012945874 2.808153146949456 35.40352568516733 5.116375154937336 8 55.18317036220907 3.0553642748932655 34.71216085938576 7.049304503511913 9 50.1728412064454 4.99242528577331 37.722765459303126 7.111968048478171 10 25.55708580085388 17.983060184547583 41.93499517972731 14.52485883487123 11 17.379837487949317 15.309186062525823 46.603084974521416 20.707891475003443 12 15.849745214157828 12.64082082357802 52.669742459716296 18.839691502547858 13 18.8279851260157 14.178487811596199 53.53394849194326 13.45957857044484 14 15.535738878942295 16.784878115961988 52.31717394298306 15.362209062112656 15 11.021209199834733 15.184547582977551 55.024101363448565 18.770141853739155 16 11.548684754166093 15.05371160997108 51.34003580773998 22.05756782812285 17 10.933067070651425 15.386310425561216 49.45875223798375 24.22187026580361 18 12.558876187852913 14.161272551990084 53.07395675526787 20.205894504889134 19 12.72483129045586 17.174631593444428 52.663544966258094 17.436992149841622 20 12.401184409860901 21.02396364137171 50.196942569893956 16.377909378873433 21 11.767662856355873 21.575540559151634 50.909654317587105 15.747142266905383 22 9.860212091998347 19.695634210163888 48.68406555570858 21.760088142129185 23 10.282330257540284 20.041316623054676 46.30973695083322 23.36661616857182 24 11.920534361658174 20.032364688059495 45.95923426525272 22.08786668502961 25 11.50461368957444 21.601707753752926 43.668916127255194 23.224762429417435 26 11.288390028921636 21.61961162374329 45.460680347059636 21.631318000275442 27 12.567828122848093 20.072304090345682 47.737226277372265 19.622641509433965 28 10.532984437405316 17.99132350915852 48.57044484230823 22.905247211127943 29 13.8155901390993 16.223660652802643 46.6430243768076 23.317724831290455 30 18.281917091309737 17.16154799614378 44.11238121470872 20.444153697837763 31 16.80484781710508 21.782123674425012 41.417160170775375 19.99586833769453 32 16.54524170224487 20.292659413303955 40.24652251755956 22.915576366891614 33 16.99765872469357 16.25877978239912 40.244456686406835 26.499104806500483 34 17.892163613827297 14.882936234678418 42.30822200798788 24.916678143506406 35 21.21402010742322 15.467566450902078 38.6241564522793 24.6942569893954 36 21.030161134829914 16.269108938162788 39.00289216361383 23.697837763393473 37 16.517697286875084 17.190469632282053 44.92080980581187 21.371023275030986 38 16.799338934031123 17.111279438093927 45.15631455722352 20.933067070651425 39 17.80126704310701 14.555846302162237 43.49745214157829 24.14543451315246 40 21.003993940228618 14.223247486572097 42.10852499655695 22.66423357664234 41 22.482440435201763 15.59358215121884 39.46219528990497 22.461782123674425 42 22.974796859936646 14.909792039663957 42.99338934031125 19.122021760088142 43 18.276408208235782 14.002892163613827 47.16430243768076 20.55639719046963 44 17.28274342377083 14.338245420740945 42.734471835835286 25.644539319652942 45 20.824955240325025 12.310976449524858 40.08607629803058 26.777992012119544 46 22.682137446632694 13.626222283432035 43.206858559427076 20.484781710508194 47 16.634761052196666 17.642198044346507 46.92948629665336 18.79355460680347 48 16.075609420190055 16.880594959371987 47.04930450351191 19.994491116926046 49 20.408345957857044 12.458339071753203 47.251755956479826 19.88155901390993 50 19.60749208098058 11.094201900564661 42.902492769590964 26.395813248863792 51 17.474177110590826 11.72083735022724 39.41812422531331 31.386861313868614 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 355.0 1 612.0 2 869.0 3 8684.5 4 16500.0 5 9744.0 6 2988.0 7 2776.0 8 2564.0 9 2536.5 10 2509.0 11 2377.0 12 2245.0 13 2068.0 14 1891.0 15 1743.0 16 1595.0 17 1483.5 18 1372.0 19 1258.5 20 1145.0 21 1062.0 22 979.0 23 901.5 24 824.0 25 777.5 26 745.5 27 760.0 28 792.5 29 825.0 30 828.5 31 832.0 32 910.5 33 989.0 34 1107.0 35 1225.0 36 1330.5 37 1436.0 38 1635.0 39 1834.0 40 2560.5 41 3287.0 42 4407.0 43 5527.0 44 6641.0 45 7755.0 46 10429.0 47 13103.0 48 16200.5 49 19298.0 50 19196.0 51 19094.0 52 15550.0 53 12006.0 54 9106.0 55 6206.0 56 4838.5 57 3471.0 58 2999.5 59 2528.0 60 2289.5 61 2051.0 62 1926.0 63 1801.0 64 1645.0 65 1489.0 66 1238.0 67 987.0 68 837.5 69 688.0 70 590.5 71 493.0 72 427.0 73 361.0 74 317.5 75 216.5 76 159.0 77 123.5 78 88.0 79 69.0 80 50.0 81 34.5 82 19.0 83 16.0 84 13.0 85 7.0 86 1.0 87 1.5 88 2.0 89 1.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 145220.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 52.77578845888996 #Duplication Level Percentage of deduplicated Percentage of total 1 78.23488733184588 41.289078639305885 2 11.15721350191151 11.776614791351053 3 4.504116595555904 7.13124913923702 4 2.1672472958338225 4.575127392921085 5 1.1469057032136847 3.0264426387549923 6 0.611943998643024 1.9377496212642886 7 0.4292741483018228 1.5858697149153012 8 0.28705262196474474 1.2119542762704862 9 0.21659425111885283 1.028783914061424 >10 1.131248287470153 10.882109902217325 >50 0.08089664800824624 2.9011155488224762 >100 0.023486123615297297 1.9274204655006197 >500 0.006523923226471471 2.159482164991048 >1k 0.0013047846452942941 0.692742046550062 >5k 0.0 0.0 >10k+ 0.0013047846452942941 7.874259743836936 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 11435 7.874259743836936 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC 1006 0.692742046550062 No Hit CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT 725 0.499242528577331 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 685 0.4716981132075472 No Hit TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 590 0.4062801267043107 No Hit GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC 587 0.40421429555157695 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC 549 0.3780471009502823 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 277 0.19074507643575264 No Hit TCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG 253 0.17421842721388237 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 202 0.13909929761740808 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG 172 0.11844098609007025 No Hit TTCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT 172 0.11844098609007025 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 170 0.11706376532158104 No Hit GTGCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC 160 0.11017766147913512 No Hit CGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG 152 0.10466877840517835 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 148 0.10191433686819998 No Hit GGCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT 146 0.10053711609971079 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.5309186062525822 0.0 2 0.0 0.0 0.0 1.9735573612450075 0.0 3 0.0 0.0 0.0 2.7874948354221183 0.0 4 0.0 0.0 0.0 3.950557774411238 0.0 5 0.0 0.0 0.0 6.4109626773171735 0.0 6 0.0 0.0 0.0 8.247486572097507 0.0 7 0.0 0.0 0.0 10.005508883073956 0.0 8 0.0 0.0 0.0 12.652527200110178 0.0 9 0.0 0.0 0.0 13.914061424046274 0.0 10 0.0 0.0 0.0 16.716705687921774 0.0 11 0.0 0.0 0.0 23.108387274480098 0.0 12 0.0 0.0 0.0 28.674425010329156 0.0 13 0.0 0.0 0.0 30.60391130698251 0.0 14 0.0 0.0 0.0 31.283569756231923 0.0 15 0.0 0.0 0.0 32.31855116375155 0.0 16 0.0 0.0 0.0 34.581324886379285 0.0 17 0.0 0.0 0.0 37.46591378597989 0.0 18 6.886103842445945E-4 0.0 0.0 40.124638479548274 0.0 19 6.886103842445945E-4 0.0 0.0 41.70706514254235 0.0 20 6.886103842445945E-4 0.0 0.0 43.10701005371161 0.0 21 6.886103842445945E-4 0.0 0.0 44.55653491254648 0.0 22 6.886103842445945E-4 0.0 0.0 45.827709681862004 0.0 23 0.001377220768489189 0.0 0.0 46.729789285222424 0.0 24 0.001377220768489189 0.0 0.0 47.20424183996695 0.0 25 0.001377220768489189 0.0 0.0 47.54372675939953 0.0 26 0.001377220768489189 0.0 0.0 47.81090758848644 0.0 27 0.001377220768489189 0.0 0.0 48.01817931414406 0.0 28 0.001377220768489189 0.0 0.0 48.23715741633384 0.0 29 0.001377220768489189 0.0 0.0 48.4203277785429 0.0 30 0.001377220768489189 0.0 0.0 48.626222283432035 0.0 31 0.001377220768489189 0.0 0.0 48.781848230271315 0.0 32 0.001377220768489189 0.0 0.0 48.92232474865721 0.0 33 0.001377220768489189 0.0 0.0 49.08414818895469 0.0 34 0.001377220768489189 0.0 0.0 49.22806775926181 0.0 35 0.001377220768489189 0.0 0.0 49.40159757609145 0.0 36 0.001377220768489189 0.0 0.0 49.53449938025065 0.0 37 0.001377220768489189 0.0 0.0 49.672221457099575 0.0 38 0.001377220768489189 0.0 0.0 49.843685442776476 0.0 39 0.001377220768489189 0.0 0.0 50.11499793416885 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTATAGG 20 7.0129195E-4 45.000004 2 ATGACGA 20 7.0129195E-4 45.000004 37 GGGTACT 20 7.0129195E-4 45.000004 7 CAACCCG 20 7.0129195E-4 45.000004 23 GGCCGAT 20 7.0129195E-4 45.000004 8 AGGGTCT 20 7.0129195E-4 45.000004 6 CGAAGGG 20 7.0129195E-4 45.000004 41 ACTCCGG 20 7.0129195E-4 45.000004 30 AACCCGA 20 7.0129195E-4 45.000004 24 TAGCATA 20 7.0129195E-4 45.000004 30 TCTATAG 20 7.0129195E-4 45.000004 1 GATGACG 20 7.0129195E-4 45.000004 36 GCAACCC 20 7.0129195E-4 45.000004 22 GCTATAG 20 7.0129195E-4 45.000004 9 CGGGTAC 20 7.0129195E-4 45.000004 6 TCGTTGG 20 7.0129195E-4 45.000004 2 TGCTATG 20 7.0129195E-4 45.000004 1 TGCTATA 20 7.0129195E-4 45.000004 8 GTAGGGT 20 7.0129195E-4 45.000004 4 GCACCGA 20 7.0129195E-4 45.000004 9 >>END_MODULE