SRR2933577.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933577.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	145450
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11239	7.727053970436576	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCC	1062	0.730147817119285	No Hit
CCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	708	0.48676521141285667	No Hit
CTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGCT	690	0.47438982468202134	Illumina Single End Adapter 1 (95% over 21bp)
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGC	592	0.40701271914747333	No Hit
GCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	575	0.3953248539016845	No Hit
TCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTGC	567	0.38982468202131315	No Hit
TCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG	266	0.18288071502234446	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	213	0.14644207631488484	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	202	0.13887933997937435	No Hit
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCG	170	0.11687865245788931	No Hit
CGCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG	167	0.11481608800275007	No Hit
GGCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCT	164	0.11275352354761087	No Hit
GCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTCTG	163	0.11206600206256445	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	153	0.10519078721210039	No Hit
GTGCCTGTCTCTTATACACATCTGACGCGCTTCTGTTCGTATGCCGTCTTC	152	0.10450326572705396	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGACC	30	2.152401E-6	45.000004	6
TGTTTCG	20	7.012962E-4	45.0	1
GGTAATG	20	7.012962E-4	45.0	8
GTATTGG	20	7.012962E-4	45.0	2
TATGGGT	25	3.8739672E-5	45.0	4
ATGGAAG	20	7.012962E-4	45.0	40
GGGTACA	20	7.012962E-4	45.0	7
CGTTAGG	20	7.012962E-4	45.0	2
GTGCTAG	20	7.012962E-4	45.0	1
GTACTTG	25	3.8739672E-5	45.0	1
AAACACG	40	6.7448127E-9	45.0	40
ATTGGGC	20	7.012962E-4	45.0	4
GAGTTGC	20	7.012962E-4	45.0	10
TTACGGG	20	7.012962E-4	45.0	3
GGCATAG	20	7.012962E-4	45.0	7
AACACGT	40	6.7448127E-9	45.0	41
CGTTTTT	3555	0.0	44.55696	1
TGGGAGA	75	0.0	42.0	6
TTGGGAG	170	0.0	41.029415	5
CTCGGGA	55	6.002665E-11	40.909092	4