FastQCFastQC Report
Sat 14 Jan 2017
SRR2933575.fastq

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2933575.fastq
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences105428
Sequences flagged as poor quality0
Sequence length51
%GC32

[OK]Per base sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1190011.28732405053686No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCC11141.0566452934704254No Hit
CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGC6400.607049360701142No Hit
CTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGCT5190.49227909094358235TruSeq Adapter, Index 19 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC5160.48943354706529574TruSeq Adapter, Index 13 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC4380.41544940622984405TruSeq Adapter, Index 13 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTGC2870.2722236976894184TruSeq Adapter, Index 13 (95% over 21bp)
CGTTTTTTTCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCG2090.1982395568539667No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA1920.18211480821034262No Hit
TCCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTG1610.15271085480138105No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA1480.1403801646621391No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1420.1346890769055659No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA1370.1299465037750882No Hit
CGCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCTG1360.12899798914899266No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTTT1270.12046135751413287No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA1240.11761581363584625No Hit
TTCCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATGCCGTCTTCT1160.11002769662708199No Hit
CGTTTTTTTTTTCTGTCTCTTATACACATCTGACGCGCTATCTGTCGTATG1130.10718215274879539No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAA1130.10718215274879539No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATTTTTTTTTTTTTT1110.10528512349660432No Hit

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCCTCTG207.00413E-445.01
GGGCACA207.00413E-445.07
GGACCGA253.8666585E-545.08
CTCTCGG207.00413E-445.02
TGTTCGG207.00413E-445.02
TGCTTTG253.8666585E-545.01
CGGGATT207.00413E-445.06
CGGGAGA253.8666585E-545.06
GACCGAT253.8666585E-545.09
CGGGACC253.8666585E-545.06
CGGGAAT207.00413E-445.06
TGTAGGG253.8666585E-545.03
GGCCACC253.8666585E-545.08
GATTTGT207.00413E-445.010
GGGACCG253.8666585E-545.07
TGGGCTT253.8666585E-545.06
TGGGTGT351.1979319E-745.06
TGGGCAC253.8666585E-545.06
CCGGGAT207.00413E-445.05
GGGAAGT207.00413E-445.07