##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933574.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 81236 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.08497464178443 33.0 31.0 34.0 30.0 34.0 2 32.289588359840465 34.0 31.0 34.0 30.0 34.0 3 32.32441282190162 33.0 31.0 34.0 30.0 34.0 4 35.95186862967157 37.0 35.0 37.0 35.0 37.0 5 35.98088285981584 37.0 35.0 37.0 35.0 37.0 6 35.947289379093014 37.0 35.0 37.0 35.0 37.0 7 35.998005810231916 37.0 35.0 37.0 35.0 37.0 8 35.77609680437244 37.0 35.0 37.0 35.0 37.0 9 37.62911763257669 39.0 37.0 39.0 35.0 39.0 10 37.23139987197794 39.0 37.0 39.0 34.0 39.0 11 37.23889654832833 39.0 37.0 39.0 34.0 39.0 12 37.25888768526269 39.0 37.0 39.0 34.0 39.0 13 37.18882022748535 39.0 37.0 39.0 33.0 39.0 14 38.331454035156824 40.0 38.0 41.0 33.0 41.0 15 38.36099758727658 40.0 38.0 41.0 33.0 41.0 16 38.43397016101236 40.0 38.0 41.0 34.0 41.0 17 38.39903491063075 40.0 38.0 41.0 34.0 41.0 18 37.93905411393963 39.0 38.0 40.0 34.0 41.0 19 37.438155497562654 38.0 37.0 40.0 34.0 41.0 20 36.741567777832486 37.0 35.0 40.0 33.0 41.0 21 36.6299177704466 37.0 35.0 40.0 33.0 41.0 22 36.642412231030576 37.0 35.0 40.0 33.0 41.0 23 36.59797380471712 37.0 35.0 40.0 33.0 41.0 24 36.5096139642523 37.0 35.0 40.0 33.0 41.0 25 36.40386035747698 37.0 35.0 40.0 33.0 41.0 26 36.30221822837166 37.0 35.0 40.0 33.0 41.0 27 36.204699886749715 37.0 35.0 40.0 32.0 41.0 28 36.04882071987789 37.0 35.0 40.0 32.0 41.0 29 35.94214387709882 37.0 35.0 40.0 31.0 41.0 30 35.688980255059334 37.0 35.0 40.0 31.0 41.0 31 35.14136589689301 36.0 35.0 40.0 28.0 41.0 32 34.44232852429957 36.0 34.0 40.0 23.0 41.0 33 33.746134718597666 37.0 33.0 40.0 18.0 41.0 34 33.063235511349646 36.0 33.0 40.0 14.0 41.0 35 32.60281156137673 36.0 32.0 40.0 10.0 41.0 36 32.2733394061746 36.0 31.0 40.0 10.0 41.0 37 32.02534590575607 36.0 31.0 40.0 9.0 41.0 38 31.910495346890542 36.0 31.0 40.0 8.0 41.0 39 31.87675414840711 36.0 30.0 40.0 8.0 41.0 40 31.604436456743315 35.0 30.0 40.0 8.0 41.0 41 31.41818898025506 35.0 29.0 40.0 8.0 41.0 42 31.34660741543158 35.0 29.0 40.0 8.0 41.0 43 31.154562016839826 35.0 27.0 40.0 7.0 41.0 44 30.950846915160767 35.0 26.0 40.0 7.0 41.0 45 30.931101974494066 35.0 26.0 40.0 7.0 41.0 46 30.599167856615292 35.0 24.0 40.0 7.0 41.0 47 30.381813481707617 35.0 24.0 39.0 7.0 41.0 48 30.408919690777488 35.0 24.0 39.0 7.0 41.0 49 30.486754640799646 35.0 24.0 39.0 7.0 41.0 50 30.376507952139445 35.0 24.0 39.0 7.0 41.0 51 29.32513910089123 35.0 22.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 2.0 11 0.0 12 2.0 13 1.0 14 2.0 15 3.0 16 12.0 17 14.0 18 30.0 19 79.0 20 158.0 21 248.0 22 390.0 23 636.0 24 1173.0 25 2145.0 26 3173.0 27 3513.0 28 3098.0 29 2677.0 30 2526.0 31 2527.0 32 2757.0 33 3178.0 34 4574.0 35 6813.0 36 8294.0 37 9034.0 38 14064.0 39 10111.0 40 2.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.4450243734305 4.425377911270865 35.12728347038259 42.00231424491604 2 45.970998079669116 6.145058840907971 33.722733763356146 14.16120931606677 3 15.411886355802846 5.929637106701462 62.752966665025355 15.905509872470333 4 12.472302919887735 4.502929735585209 65.47097346004234 17.553793884484712 5 12.026687675414841 5.541877985129746 64.61790339258457 17.813530946870845 6 13.665123836722634 7.353882515141071 67.82460977891576 11.156383869220543 7 53.024521148259396 2.3302476734452706 40.00689349549461 4.638337682800729 8 51.67905854547246 3.9034418238219506 38.42877541976464 5.988724210940962 9 47.635284849081685 4.579250578561229 40.512826825545325 7.272637746811758 10 25.249889211679548 17.039243685065735 45.09700132945984 12.613865773794869 11 17.103254714658526 14.811167462701267 49.20724801812005 18.878329804520163 12 14.404943621054706 12.70249643015412 54.62110394406421 18.271456004726968 13 17.161110837559704 14.492343296075633 55.61450588409079 12.732039982273868 14 15.14353242404845 16.91491456989512 53.502141907528674 14.439411098527746 15 10.810478113151804 14.638830075336056 56.80609581958738 17.744595991924765 16 10.42025702890344 15.001969570141316 54.01423014427101 20.563543256684227 17 10.116204638337683 14.935496577871879 52.58136786646315 22.366930917327295 18 11.068984194199615 13.985178984686591 55.40031513122261 19.54552168989118 19 12.192870156088434 15.823034122802698 55.56772859323452 16.41636712787434 20 12.860062041459452 18.901718449948298 53.26825545324733 14.96996405534492 21 11.732483135555665 20.48722241370821 52.91496380914865 14.865330641587473 22 10.031266925993403 18.346545866364668 51.76030331380176 19.86188389384017 23 10.358707961987296 19.487665566990003 48.80348613915013 21.35014033187257 24 11.654931311241322 18.436407504062238 49.735339012260575 20.173322172435864 25 10.374710719385494 21.128563690974445 47.33984932788419 21.156876261755873 26 10.324240484514254 21.256585750160028 49.15554680191048 19.263626963415234 27 12.532621005465558 20.582007976759073 49.98030429858683 16.90506671918854 28 9.664434487173175 19.27470579546014 51.03279334285292 20.028066374513763 29 12.670490915357725 17.99202324092767 48.78625240041361 20.551233443301 30 17.97602048352947 19.610763700822297 46.081786400118176 16.33142941553006 31 16.70687872371855 25.25358215569452 40.4685114973657 17.571027623221234 32 15.649465754099168 24.84366537003299 39.61913437392289 19.88773450194495 33 18.369934511792803 19.964055344920972 37.71973016889064 23.946279974395587 34 16.33142941553006 23.180609581958738 37.761583534393615 22.726377468117583 35 16.92722438327835 23.881037963464475 36.58599635629523 22.605741296961938 36 20.11177310551972 26.84647200748437 34.551184204047466 18.490570682948444 37 20.42074942143877 27.284701363927322 35.46334137574475 16.831207838889163 38 20.36904820522921 25.4136097296765 34.23728396277512 19.980058102319166 39 20.833128169776945 21.543404401989267 33.60086661086218 24.022600817371607 40 17.564872716529617 24.117386380422474 36.20931606676842 22.108424836279482 41 15.659313604805753 25.68073268009257 36.93559505637894 21.724358658722736 42 17.552562903146388 21.95824511300409 38.46324289723768 22.025949086611845 43 18.83893840169383 20.537692648579448 38.038554335516274 22.58481461421045 44 18.45733418681373 20.516765965827958 36.534295140085675 24.49160470727264 45 21.529863607267714 19.120833128169775 34.99187552316707 24.35742774139544 46 21.69481510660298 20.1376237136245 39.10704613718056 19.060515042591955 47 14.667142646117485 23.07597616820129 42.49224481756856 19.764636368112658 48 15.112757890590379 20.903294106061352 42.76429169333793 21.21965631001034 49 18.880791767196808 15.81934117878773 44.172534344379336 21.12733270963612 50 18.473336944211926 14.971195036683243 40.512826825545325 26.042641193559508 51 15.906740853808657 14.757004283815057 38.65527598601605 30.680978876360232 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 167.0 1 351.5 2 536.0 3 5096.0 4 9656.0 5 5888.5 6 2121.0 7 2037.0 8 1953.0 9 1896.5 10 1840.0 11 1785.5 12 1731.0 13 1585.5 14 1440.0 15 1314.5 16 1189.0 17 1109.0 18 1029.0 19 933.5 20 838.0 21 754.5 22 671.0 23 630.5 24 590.0 25 566.0 26 556.5 27 571.0 28 516.0 29 461.0 30 497.0 31 533.0 32 578.0 33 623.0 34 738.0 35 853.0 36 927.5 37 1002.0 38 1121.0 39 1240.0 40 1590.0 41 1940.0 42 2628.0 43 3316.0 44 3743.0 45 4170.0 46 5863.5 47 7557.0 48 8533.0 49 9509.0 50 9188.0 51 8867.0 52 7269.0 53 5671.0 54 4302.5 55 2934.0 56 2344.0 57 1754.0 58 1582.0 59 1410.0 60 1277.0 61 1144.0 62 1017.0 63 890.0 64 832.0 65 774.0 66 646.5 67 519.0 68 457.0 69 395.0 70 322.0 71 249.0 72 217.5 73 186.0 74 174.0 75 130.5 76 99.0 77 76.5 78 54.0 79 43.0 80 32.0 81 19.5 82 7.0 83 6.0 84 5.0 85 5.5 86 6.0 87 3.0 88 0.0 89 0.0 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 81236.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.891821359988185 #Duplication Level Percentage of deduplicated Percentage of total 1 79.8294669246635 46.21473238465705 2 10.648748644453422 12.329509084642277 3 4.403665823215463 7.648087055000246 4 1.9817559378255971 4.589098429267812 5 1.0057624019222182 2.9112708651336847 6 0.5996300155223373 2.0828204244423656 7 0.3295838737800081 1.3356147520803585 8 0.21476110485019884 0.9946329213649121 9 0.13821259223032598 0.720124082918903 >10 0.7782432116353739 7.847506031808557 >50 0.04040060388271067 1.5707321877000344 >100 0.02551617087329095 3.291644098675464 >500 0.002126347572774246 0.7447437096853612 >1k 0.0 0.0 >5k 0.002126347572774246 7.7194839726229745 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6271 7.7194839726229745 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCC 605 0.7447437096853612 No Hit CCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC 360 0.443153281796248 Illumina PCR Primer Index 7 (96% over 27bp) CTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGCT 348 0.42838150573637307 Illumina PCR Primer Index 7 (96% over 28bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGC 308 0.3791422522034566 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGC 305 0.3754493081884879 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCG 250 0.3077453345807278 No Hit TCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC 224 0.27573981978433204 Illumina PCR Primer Index 7 (96% over 27bp) GCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC 220 0.2708158944310404 Illumina PCR Primer Index 7 (96% over 27bp) GAATCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTC 202 0.24865823034122803 Illumina PCR Primer Index 7 (95% over 24bp) TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 132 0.16248953665862426 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 115 0.14156285390713477 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCG 108 0.13294598453887438 No Hit TCCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTG 102 0.12556009650893693 Illumina PCR Primer Index 7 (96% over 26bp) CGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTG 98 0.12063617115564529 Illumina PCR Primer Index 7 (96% over 26bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 93 0.11448126446403073 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAGCATCT 84 0.10340243241912452 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.46284898320941453 0.0 2 0.0 0.0 0.0 1.591658870451524 0.0 3 0.0 0.0 0.0 2.256388793145896 0.0 4 0.0 0.0 0.0 3.2251711064060267 0.0 5 0.0 0.0 0.0 5.431089664680684 0.0 6 0.0 0.0 0.0 6.8836476439017185 0.0 7 0.0 0.0 0.0 8.379289969964056 0.0 8 0.0 0.0 0.0 10.612290117681816 0.0 9 0.0 0.0 0.0 11.622925796444926 0.0 10 0.0 0.0 0.0 13.953173469890196 0.0 11 0.0 0.0 0.0 19.44335023881038 0.0 12 0.0 0.0 0.0 24.612240878428285 0.0 13 0.0 0.0 0.0 26.093111428430745 0.0 14 0.0 0.0 0.0 26.74676251908021 0.0 15 0.0 0.0 0.0 27.582598847801467 0.0 16 0.0 0.0 0.0 29.46846225811217 0.0 17 0.0 0.0 0.0 31.8664139051652 0.0 18 0.0 0.0 0.0 34.119109754296126 0.0 19 0.0 0.0 0.0 35.61352109902014 0.0 20 0.0 0.0 0.0 36.775567482396966 0.0 21 0.0 0.0 0.0 38.082869663695895 0.0 22 0.0 0.0 0.0 39.04549707026442 0.0 23 0.0 0.0 0.0 39.86902358560244 0.0 24 0.0 0.0 0.0 40.33187256881185 0.0 25 0.0 0.0 0.0 40.65069673543749 0.0 26 0.0 0.0 0.0 40.89935496577872 0.0 27 0.0 0.0 0.0 41.088926091880445 0.0 28 0.0 0.0 0.0 41.24279875917081 0.0 29 0.0 0.0 0.0 41.4089812398444 0.0 30 0.0 0.0 0.0 41.560391944458125 0.0 31 0.0 0.0 0.0 41.69949283568861 0.0 32 0.0 0.0 0.0 41.84474863361071 0.0 33 0.0 0.0 0.0 41.992466394209465 0.0 34 0.0 0.0 0.0 42.1180264907184 0.0 35 0.0 0.0 0.0 42.263282288640504 0.0 36 0.0 0.0 0.0 42.38761140381112 0.0 37 0.0 0.0 0.0 42.49470678024521 0.0 38 0.0 0.0 0.0 42.60795706337092 0.0 39 0.0 0.0 0.0 42.750750898616374 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CTTCTGG 30 2.1405867E-6 45.000004 2 AGCTTGG 20 6.994581E-4 45.0 2 TGTCTTG 25 3.8587594E-5 45.0 1 GGACCGA 20 6.994581E-4 45.0 8 CCTCGGG 25 3.8587594E-5 45.0 3 TACGGGA 20 6.994581E-4 45.0 4 TCGCGGG 25 3.8587594E-5 45.0 3 ATGAATG 20 6.994581E-4 45.0 21 TATTGGG 25 3.8587594E-5 45.0 3 AAGGGCT 20 6.994581E-4 45.0 5 ACCTGGG 20 6.994581E-4 45.0 3 CTTGGGT 35 1.1933844E-7 45.0 4 TCTGCGG 25 3.8587594E-5 45.0 2 GACCGAT 20 6.994581E-4 45.0 9 CGGGAAC 25 3.8587594E-5 45.0 6 GGGACCG 25 3.8587594E-5 45.0 7 CTTGCGG 25 3.8587594E-5 45.0 2 TGGGCTA 20 6.994581E-4 45.0 6 GGCTAGG 20 6.994581E-4 45.0 2 CTGCTTG 20 6.994581E-4 45.0 1 >>END_MODULE