##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933573.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 80770 Sequences flagged as poor quality 0 Sequence length 51 %GC 37 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 31.98027733069209 33.0 31.0 34.0 30.0 34.0 2 32.23493871486938 34.0 31.0 34.0 30.0 34.0 3 32.287903924724525 33.0 31.0 34.0 30.0 34.0 4 35.897449548099544 37.0 35.0 37.0 35.0 37.0 5 35.97010028475919 37.0 35.0 37.0 35.0 37.0 6 35.95454995666708 37.0 35.0 37.0 35.0 37.0 7 35.92687879163056 37.0 35.0 37.0 35.0 37.0 8 35.75047666212703 37.0 35.0 37.0 35.0 37.0 9 37.619896000990465 39.0 37.0 39.0 35.0 39.0 10 37.29182864925096 39.0 37.0 39.0 34.0 39.0 11 37.27612975114523 39.0 37.0 39.0 34.0 39.0 12 37.252086170607896 39.0 37.0 39.0 34.0 39.0 13 37.1968428872106 39.0 37.0 39.0 34.0 39.0 14 38.3557137551071 40.0 38.0 41.0 34.0 41.0 15 38.39185341091989 40.0 38.0 41.0 34.0 41.0 16 38.515958895629566 40.0 38.0 41.0 34.0 41.0 17 38.53183112541785 40.0 38.0 41.0 34.0 41.0 18 38.138492014361766 39.0 38.0 40.0 34.0 41.0 19 37.659428005447566 38.0 37.0 40.0 34.0 41.0 20 36.91377986876316 38.0 35.0 40.0 34.0 41.0 21 36.82590070570757 37.0 35.0 40.0 33.0 41.0 22 36.8263959390863 37.0 35.0 40.0 33.0 41.0 23 36.722322644546246 37.0 35.0 40.0 33.0 41.0 24 36.64116627460691 37.0 35.0 40.0 33.0 41.0 25 36.57433453014733 37.0 35.0 40.0 33.0 41.0 26 36.52320168379349 37.0 35.0 40.0 33.0 41.0 27 36.43636251083323 37.0 35.0 40.0 33.0 41.0 28 36.36246130989229 37.0 35.0 40.0 33.0 41.0 29 36.154661384177295 37.0 35.0 40.0 32.0 41.0 30 35.84983285873468 37.0 35.0 40.0 31.0 41.0 31 35.302203788535344 37.0 35.0 40.0 29.0 41.0 32 34.66787173455491 37.0 35.0 40.0 23.0 41.0 33 33.890318187445835 37.0 34.0 40.0 18.0 41.0 34 33.2384796335273 37.0 33.0 40.0 15.0 41.0 35 32.85905658041352 37.0 33.0 40.0 10.0 41.0 36 32.47766497461929 37.0 32.0 40.0 10.0 41.0 37 32.26632413024638 36.0 31.0 40.0 10.0 41.0 38 32.11901696174322 36.0 31.0 40.0 9.0 41.0 39 32.07944781478272 36.0 31.0 40.0 8.0 41.0 40 31.888956295654328 36.0 30.0 40.0 8.0 41.0 41 31.717147455738516 36.0 30.0 40.0 8.0 41.0 42 31.55558994676241 36.0 30.0 40.0 8.0 41.0 43 31.42141884363006 36.0 29.0 40.0 8.0 41.0 44 31.265098427634022 35.0 28.0 40.0 7.0 41.0 45 31.147728116875076 35.0 27.0 40.0 7.0 41.0 46 30.8361396558128 35.0 26.0 40.0 7.0 41.0 47 30.71386653460443 35.0 25.0 39.0 7.0 41.0 48 30.674953571870745 35.0 25.0 39.0 7.0 41.0 49 30.749275721183608 35.0 26.0 40.0 7.0 41.0 50 30.59541909124675 35.0 25.0 40.0 7.0 41.0 51 29.64630432091123 35.0 23.0 39.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 3.0 13 2.0 14 2.0 15 6.0 16 15.0 17 19.0 18 32.0 19 70.0 20 159.0 21 197.0 22 383.0 23 644.0 24 1126.0 25 2111.0 26 3067.0 27 3403.0 28 3019.0 29 2640.0 30 2458.0 31 2363.0 32 2614.0 33 3057.0 34 4376.0 35 6528.0 36 7975.0 37 8137.0 38 14119.0 39 12243.0 40 1.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 18.547728116875078 4.5821468366967935 35.30518756964219 41.564937476785936 2 45.95889562956543 6.221369320292188 33.63748916676984 14.182245883372541 3 15.474805001857126 6.087656308035162 62.660641327225456 15.77689736288226 4 12.543023399777145 4.510337996780983 65.24204531385416 17.70459328958772 5 12.047790021047419 5.432710164665099 64.52395691469604 17.99554289959143 6 13.464157484214438 7.454500433329206 67.79621146465273 11.28513061780364 7 52.904543766249844 2.2929305435186333 40.024761668936485 4.777764021295035 8 51.59341339606289 3.986628698774297 38.43011018942677 5.98984771573604 9 47.45697660022286 4.5326234988238205 40.54228054970905 7.468119351244273 10 25.26680698279064 16.970409805620896 44.96842887210598 12.79435433948248 11 17.365358425157858 14.95976228797821 49.092484833477776 18.582394453386158 12 14.745573851677603 12.569023152160455 54.37538690107713 18.31001609508481 13 17.247740497709547 14.703479014485577 55.32994923857868 12.718831249226199 14 14.967190788659154 17.23164541290083 53.36758697536214 14.433576823077876 15 11.05856134703479 14.530147331930172 56.598984771573605 17.812306549461436 16 10.349139532004457 14.969666955552805 54.05596137179646 20.62523214064628 17 10.366472700259997 15.089761049894761 52.099789525814046 22.443976724031202 18 11.022656927076884 14.256530890181999 55.2036647270026 19.517147455738517 19 12.06264702240931 15.758326111179894 55.49956667079361 16.679460195617185 20 13.1719697907639 18.74582146836697 53.1769221245512 14.90528661631794 21 11.989600099046676 20.430853039494863 52.79435433948249 14.785192521975981 22 10.170855515661756 18.553918534109197 51.25913086542033 20.016095084808715 23 10.589327720688374 19.332673022161696 48.83372539309149 21.24427386405844 24 12.00569518385539 18.42887210597994 49.324006438033926 20.24142627213074 25 10.503899962857496 20.911229416862696 47.18955057570881 21.395320044571005 26 10.10895134332054 21.714745573851676 48.99839049151913 19.177912591308655 27 12.736164417481739 20.469233626346416 50.03838058685155 16.756221369320293 28 9.754859477528784 19.38591061037514 50.947133836820605 19.912096075275475 29 12.789402005695184 17.96706698031447 48.93277206883744 20.310758945152905 30 17.988114398910486 19.79571623127399 45.693945771945025 16.522223597870497 31 16.7921257892782 25.378234493004832 40.37885353472824 17.450786182988733 32 15.867277454500433 24.82233502538071 39.50600470471709 19.80438281540176 33 18.360777516404607 20.248854772811686 37.51392843877677 23.876439272006934 34 16.530890181998267 23.294540051999505 37.35545375758326 22.81911600841897 35 17.101646650984275 24.17729354958524 36.34517766497462 22.375882134455864 36 19.852668069827907 27.017456976600222 34.37662498452396 18.753249969047914 37 20.615327473071684 27.293549585242044 35.59985142998638 16.49127151169989 38 20.430853039494863 25.369567908877062 34.36548223350254 19.83409681812554 39 20.70818373158351 21.797697164788907 33.65853658536586 23.83558251826173 40 17.568404110437044 24.012628451157607 36.41822458833725 22.000742850068093 41 15.563947010028475 25.701374272625976 36.70174569766002 22.032933019685526 42 17.57583261111799 22.12578927819735 38.28525442614833 22.013123684536335 43 18.735916800792374 20.517518880772563 38.20725516899839 22.539309149436672 44 18.765630803516157 20.471709793240063 36.55688993438157 24.2057694688622 45 21.18484585861087 19.43791011514176 35.12690355329949 24.250340472947876 46 21.7209359910858 20.103999009533243 39.08134208245635 19.0937229169246 47 14.854525194998141 23.056828030209235 42.733688250588095 19.354958524204534 48 14.989476290701994 20.914943667203172 43.11006561842268 20.985514423672154 49 18.816392224835955 16.09260864182246 44.17110313235112 20.91989600099047 50 18.37687260121332 15.138046304320913 40.484090627708305 26.00099046675746 51 15.883372539309148 15.009285625851183 38.615822706450416 30.491519128389257 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 173.0 1 371.0 2 569.0 3 5078.0 4 9587.0 5 5923.5 6 2260.0 7 2076.5 8 1893.0 9 1827.5 10 1762.0 11 1713.5 12 1665.0 13 1504.0 14 1343.0 15 1299.0 16 1255.0 17 1123.0 18 991.0 19 910.5 20 830.0 21 736.5 22 643.0 23 578.5 24 514.0 25 528.0 26 564.0 27 586.0 28 519.5 29 453.0 30 493.0 31 533.0 32 579.5 33 626.0 34 738.5 35 851.0 36 935.5 37 1020.0 38 1107.5 39 1195.0 40 1633.5 41 2072.0 42 2674.0 43 3276.0 44 3721.0 45 4166.0 46 5838.0 47 7510.0 48 8523.5 49 9537.0 50 9168.0 51 8799.0 52 7169.0 53 5539.0 54 4238.5 55 2938.0 56 2317.5 57 1697.0 58 1565.0 59 1433.0 60 1292.5 61 1152.0 62 1031.5 63 911.0 64 820.5 65 730.0 66 645.5 67 561.0 68 477.5 69 394.0 70 313.0 71 232.0 72 228.5 73 225.0 74 190.5 75 112.0 76 68.0 77 54.0 78 40.0 79 36.0 80 32.0 81 18.5 82 5.0 83 4.5 84 4.0 85 2.5 86 1.0 87 1.0 88 1.0 89 0.5 90 0.0 91 0.0 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 80770.0 >>END_MODULE >>Sequence Duplication Levels warn #Total Deduplicated Percentage 57.905162807973255 #Duplication Level Percentage of deduplicated Percentage of total 1 80.25229848193285 46.47022409310387 2 10.299337181954245 11.92769592670546 3 4.224930511011332 7.339358672774544 4 2.0568740645713066 4.764145103379968 5 1.024160786829164 2.9652098551442365 6 0.5730168911695531 1.9908381824935002 7 0.3207184092366902 1.2999876191655317 8 0.21808851828094933 1.0102760926086418 9 0.1689116955313235 0.8802773306920886 >10 0.7911054094505025 7.73678345920515 >50 0.03848620910840282 1.493128636870125 >100 0.027795595467179815 3.750154760430853 >500 0.002138122728244601 0.7403739012009409 >1k 0.0 0.0 >5k 0.002138122728244601 7.631546366225084 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 6164 7.631546366225084 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCC 598 0.7403739012009409 No Hit CCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC 384 0.47542404358053736 Illumina PCR Primer Index 7 (96% over 27bp) CTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGCT 379 0.46923362634641574 Illumina PCR Primer Index 7 (96% over 28bp) CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGC 373 0.46180512566546983 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGC 320 0.3961867029837811 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCG 279 0.3454252816639841 No Hit TCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC 251 0.3107589451529033 Illumina PCR Primer Index 7 (96% over 27bp) GCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTGC 241 0.29837811068466014 Illumina PCR Primer Index 7 (96% over 27bp) GAATCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTC 210 0.25999752383310637 Illumina PCR Primer Index 7 (95% over 24bp) TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 148 0.18323635012999878 No Hit TCCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTG 120 0.14857001361891792 Illumina PCR Primer Index 7 (96% over 26bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 112 0.1386653460443234 No Hit CGCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCTG 107 0.1324749288102018 Illumina PCR Primer Index 7 (96% over 26bp) CGTTTTTTTCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCG 105 0.12999876191655318 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGAGCATCT 95 0.11761792744831001 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 93 0.11514176055466138 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAA 85 0.10523709298006685 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA 84 0.10399900953324254 No Hit TTCCTGTCTCTTATACACATCTGACGCAGAGCATCTCGTATGCCGTCTTCT 82 0.10152284263959391 Illumina PCR Primer Index 7 (96% over 25bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4939952952829021 0.0 2 0.0 0.0 0.0 1.6899839049151912 0.0 3 0.0 0.0 0.0 2.3857868020304567 0.0 4 0.0 0.0 0.0 3.3267302216169368 0.0 5 0.0 0.0 0.0 5.513185588708679 0.0 6 0.0 0.0 0.0 6.932029218769345 0.0 7 0.0 0.0 0.0 8.368206017085551 0.0 8 0.0 0.0 0.0 10.555899467624117 0.0 9 0.0 0.0 0.0 11.547604308530396 0.0 10 0.0 0.0 0.0 13.923486442986258 0.0 11 0.0 0.0 0.0 19.32029218769345 0.0 12 0.0 0.0 0.0 24.318435062523214 0.0 13 0.0 0.0 0.0 25.844991952457594 0.0 14 0.0 0.0 0.0 26.420700755230904 0.0 15 0.0 0.0 0.0 27.245264330815896 0.0 16 0.0 0.0 0.0 29.0528661631794 0.0 17 0.0 0.0 0.0 31.33713012257026 0.0 18 0.0 0.0 0.0 33.60034666336511 0.0 19 0.0 0.0 0.0 35.14671288844868 0.0 20 0.0 0.0 0.0 36.30432091122942 0.0 21 0.0 0.0 0.0 37.59564194626718 0.0 22 0.0 0.0 0.0 38.667822211217036 0.0 23 0.0 0.0 0.0 39.498576204036155 0.0 24 0.0 0.0 0.0 39.95047666212703 0.0 25 0.0 0.0 0.0 40.26618794106723 0.0 26 0.0 0.0 0.0 40.4989476290702 0.0 27 0.0 0.0 0.0 40.6772316454129 0.0 28 0.0 0.0 0.0 40.819611241797695 0.0 29 0.0 0.0 0.0 40.96818125541662 0.0 30 0.0 0.0 0.0 41.15636993933391 0.0 31 0.001238083446824316 0.0 0.0 41.29132103503776 0.0 32 0.001238083446824316 0.0 0.0 41.41636746316702 0.0 33 0.001238083446824316 0.0 0.0 41.527794973381205 0.0 34 0.001238083446824316 0.0 0.0 41.651603318063636 0.0 35 0.001238083446824316 0.0 0.0 41.78531633032066 0.0 36 0.001238083446824316 0.0 0.0 41.90169617432215 0.0 37 0.001238083446824316 0.0 0.0 42.01188560108951 0.0 38 0.001238083446824316 0.0 0.0 42.1332177788783 0.0 39 0.001238083446824316 0.0 0.0 42.27807354215674 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACTAATC 30 2.1404376E-6 45.000004 10 GTGTTTG 25 3.858567E-5 45.000004 1 CTGGGAC 30 2.1404376E-6 45.000004 5 GGACTAA 30 2.1404376E-6 45.000004 8 ACCGATG 30 2.1404376E-6 45.000004 17 TCTGCGG 25 3.858567E-5 45.000004 2 TTGGGCA 30 2.1404376E-6 45.000004 5 CTAATCC 30 2.1404376E-6 45.000004 11 CGGGACT 30 2.1404376E-6 45.000004 6 CTATGGG 25 3.858567E-5 45.000004 3 CGATGAA 30 2.1404376E-6 45.000004 19 CCGATGA 30 2.1404376E-6 45.000004 18 TGCGGGA 30 2.1404376E-6 45.000004 4 TATGGGA 25 3.858567E-5 45.000004 4 GACTAAT 30 2.1404376E-6 45.000004 9 TCGGGCT 30 2.1404376E-6 45.000004 5 TTATGGG 20 6.9943495E-4 45.0 3 CGCGACC 20 6.9943495E-4 45.0 10 CGCTGAA 20 6.9943495E-4 45.0 37 CTCCTGG 20 6.9943495E-4 45.0 2 >>END_MODULE