SRR2933498.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933498.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	580921
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCG	17279	2.9744147655188917	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGC	15191	2.6149855143814733	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	14162	2.43785299550197	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTC	12078	2.0791123061483403	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGACAGAGT	3339	0.5747769490171641	No Hit
GCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	2868	0.4936987989761086	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCT	2738	0.47132054100299353	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTA	2646	0.4554836199758659	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTC	2634	0.4534179346245015	No Hit
GAACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCT	2574	0.44308950786767903	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCAGACAGAGTCGT	965	0.1661155303388929	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTAT	733	0.12617894687917977	No Hit
GAATGCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTT	720	0.12394112108186828	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATG	660	0.11361269432504592	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TGTACGT	20	7.030403E-4	45.0	22
CGACTAC	25	3.8884158E-5	44.999996	12
CGTTTTT	12160	0.0	44.333885	1
CCGATGA	455	0.0	43.516483	18
TACGGCT	1845	0.0	42.439026	7
ACGGCTG	1865	0.0	42.345844	8
GATACCT	2010	0.0	42.31343	5
CGGCTGT	1840	0.0	42.309784	9
TGATACC	2015	0.0	42.20844	4
CGATGAA	480	0.0	41.250004	19
ATACCTG	2095	0.0	40.811455	6
ATACGGT	50	1.0804797E-9	40.499996	6
TACCTGT	2155	0.0	40.406033	7
ATGATAC	6420	0.0	40.05841	3
TACTCGG	45	1.9254003E-8	40.0	2
GGCGACT	395	0.0	39.873417	10
ATACGGC	4415	0.0	39.59796	6
GAATGAT	6640	0.0	39.578316	1
AATGATA	6355	0.0	39.5476	2
CGGCGAG	40	3.454279E-7	39.375	31