SRR2933497.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933497.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	405987
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	22784	5.612002354755202	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCG	8114	1.9985861616258649	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGC	6292	1.5498033188254796	No Hit
GAATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTC	3330	0.8202233076428556	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCAGACAGAGT	1603	0.3948402288743235	No Hit
GCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCTGC	1357	0.3342471556971036	No Hit
GAACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCTTCT	905	0.22291354156660187	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTC	828	0.20394741703552086	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTA	820	0.20197691059073322	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCAGACAGAGTCGTATGCCG	713	0.1756213868916985	No Hit
GAATGACTGTCTCTTATACACATCTGACGCAGACAGAGTCGTATGCCGTCT	630	0.15517738252702673	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATCGAA	25	3.8863327E-5	45.0	9
TTCGTCG	20	7.027891E-4	45.0	1
CGTTCGG	20	7.027891E-4	45.0	2
GAACGGT	25	3.8863327E-5	45.0	18
GCTACGA	20	7.027891E-4	45.0	10
CCCGACA	20	7.027891E-4	45.0	41
TCGTTCA	30	2.1620199E-6	44.999996	16
CGTTTTT	10250	0.0	44.42927	1
TACGGCT	975	0.0	43.846153	7
TGATACC	1045	0.0	43.27751	4
ACGGCTG	995	0.0	42.738693	8
AATGATC	190	0.0	42.63158	2
AATGATA	2995	0.0	42.29549	2
GAATGAT	3180	0.0	42.099056	1
ATGATAC	3040	0.0	42.039474	3
GCGATTG	145	0.0	41.89655	9
GATACCT	1080	0.0	41.875	5
ACCGGTG	70	0.0	41.785713	17
ATACGGC	1990	0.0	41.60804	6
CGACCAC	655	0.0	41.564884	12