SRR2933496.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933496.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	491048
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCG	16727	3.4063879702187974	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGC	13625	2.7746778319023804	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	13139	2.67570583731122	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTC	11261	2.2932585001873544	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGTTCGTT	4051	0.8249702676724069	No Hit
GCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	3040	0.619084081393265	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTC	2704	0.5506589987129568	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCT	2686	0.5469933692836546	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCT	2646	0.5388475261074274	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTA	2102	0.4280640589107379	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGT	852	0.17350645965363876	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTAT	689	0.14031214871051303	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTT	611	0.12442775451687003	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATG	508	0.10345220833808508	No Hit
GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGTGTTCGT	501	0.10202668578224532	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATAATC	20	7.029334E-4	45.000004	9
GCACGTG	20	7.029334E-4	45.000004	36
CGAGATA	45	3.8380676E-10	45.0	19
CGTTTTT	11370	0.0	43.773087	1
TGATACC	1820	0.0	43.516483	4
GATACCT	1840	0.0	43.165764	5
TACGGCT	1675	0.0	42.313435	7
CGGCTGT	1720	0.0	42.252907	9
ACGGCTG	1685	0.0	42.195843	8
CGATGAA	445	0.0	41.460674	19
CCGATGA	440	0.0	41.420456	18
GGCGACT	305	0.0	41.311478	10
CGACCAC	1410	0.0	41.170216	12
ATGATAC	5800	0.0	41.00431	3
GAATGAT	5925	0.0	40.97468	1
CGCTTTT	330	0.0	40.909092	1
AATGACT	385	0.0	40.90909	2
TGGGCGA	480	0.0	40.781246	6
GCGACCA	1435	0.0	40.76655	11
ATACCTG	1955	0.0	40.741684	6