##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933496.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 491048 Sequences flagged as poor quality 0 Sequence length 51 %GC 38 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.297048353725096 31.0 28.0 31.0 25.0 34.0 2 28.420225721314413 31.0 26.0 33.0 16.0 34.0 3 28.487115312556003 31.0 26.0 33.0 16.0 34.0 4 33.01092764862091 35.0 32.0 37.0 28.0 37.0 5 34.20213706195728 35.0 33.0 37.0 30.0 37.0 6 33.4614172137958 35.0 33.0 37.0 28.0 37.0 7 33.527740668936644 35.0 32.0 37.0 29.0 37.0 8 33.30507404571447 35.0 32.0 37.0 28.0 37.0 9 34.63321711930402 37.0 34.0 39.0 28.0 39.0 10 34.727723155373816 37.0 33.0 39.0 28.0 39.0 11 34.88670761310503 37.0 34.0 39.0 27.0 39.0 12 34.99473167592578 37.0 34.0 39.0 27.0 39.0 13 35.092294439647446 37.0 34.0 39.0 28.0 39.0 14 35.85918688193415 38.0 34.0 40.0 27.0 41.0 15 36.09981101643831 38.0 34.0 40.0 28.0 41.0 16 36.10364363565272 38.0 34.0 40.0 30.0 41.0 17 35.321565305224745 37.0 33.0 40.0 27.0 41.0 18 35.101472768446264 37.0 33.0 39.0 27.0 40.0 19 34.4924956419739 37.0 33.0 38.0 27.0 40.0 20 33.8671535165605 35.0 32.0 38.0 27.0 40.0 21 34.359160407943826 35.0 33.0 38.0 27.0 40.0 22 34.91431387562927 35.0 33.0 39.0 29.0 40.0 23 35.180943614473534 35.0 34.0 39.0 30.0 40.0 24 34.70121250875678 35.0 33.0 39.0 27.0 40.0 25 33.698263713526984 35.0 33.0 38.0 24.0 40.0 26 33.78738942017888 35.0 32.0 38.0 24.0 40.0 27 34.44090190775647 35.0 33.0 39.0 27.0 40.0 28 34.164336276698 35.0 33.0 39.0 25.0 40.0 29 34.13374456264968 35.0 33.0 39.0 24.0 40.0 30 33.45580065492579 35.0 33.0 39.0 22.0 40.0 31 33.47976979847184 35.0 33.0 39.0 22.0 40.0 32 32.98917010149721 35.0 32.0 39.0 18.0 40.0 33 32.55494982160604 35.0 31.0 39.0 15.0 40.0 34 32.1316123881983 36.0 31.0 39.0 12.0 40.0 35 31.645851322070346 35.0 30.0 40.0 10.0 41.0 36 31.16143024714488 35.0 29.0 40.0 8.0 41.0 37 30.9059419853049 35.0 27.0 39.0 8.0 41.0 38 30.73709902086965 35.0 26.0 39.0 8.0 40.0 39 30.46842467538815 35.0 25.0 39.0 7.0 40.0 40 30.30868265424154 35.0 24.0 39.0 7.0 40.0 41 29.73308312018377 35.0 23.0 39.0 7.0 40.0 42 29.98147635261726 35.0 23.0 39.0 7.0 40.0 43 29.843557045339764 35.0 23.0 39.0 7.0 40.0 44 29.99220035515876 35.0 23.0 39.0 7.0 40.0 45 30.127901956631533 35.0 23.0 39.0 7.0 40.0 46 29.883591828090125 35.0 23.0 39.0 7.0 40.0 47 29.909204395496978 35.0 23.0 39.0 7.0 40.0 48 29.60415886023362 35.0 23.0 39.0 7.0 40.0 49 29.851584773789934 35.0 23.0 39.0 7.0 40.0 50 29.807686824913247 35.0 23.0 39.0 7.0 40.0 51 28.68046911910852 34.0 22.0 38.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 16.0 9 29.0 10 35.0 11 34.0 12 42.0 13 44.0 14 90.0 15 128.0 16 254.0 17 525.0 18 1051.0 19 1756.0 20 2963.0 21 4243.0 22 5927.0 23 8495.0 24 11707.0 25 17035.0 26 22226.0 27 24384.0 28 22914.0 29 21821.0 30 22190.0 31 24736.0 32 28501.0 33 33622.0 34 38699.0 35 45266.0 36 50256.0 37 53323.0 38 42358.0 39 6377.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 29.748008341343414 2.5673661230673988 31.334004007754846 36.35062152783435 2 35.232197259738356 18.65459181179844 33.308963685831124 12.804247242632085 3 11.94669360225477 18.64563138430459 56.176992880533064 13.230682132907578 4 11.253075055799027 2.7186751600658186 70.90752838826347 15.120721395871687 5 23.456362718104952 3.5102474707156937 56.0564344015249 16.976955409654455 6 13.45448917417442 16.89936625340089 59.167739202684864 10.478405369739823 7 53.17504602401395 1.146120134895163 43.035915022563984 2.6429188185269057 8 52.11588276502501 13.015835519134585 31.543148531304478 3.325133184535931 9 48.826183998305666 3.2503950733940465 30.747706945145893 17.1757139831544 10 27.3236017660188 23.4221501767648 36.51353839135889 12.740709665857514 11 26.007029862661085 15.897427542724948 44.55715123572441 13.538391358889559 12 20.335486551212917 13.915136605790066 46.30606376566038 19.443313077336636 13 18.259518417751423 15.191386585425457 53.80838533096561 12.740709665857514 14 15.539825027288575 22.00986461608641 44.45390267346573 17.996407683159283 15 11.671975041136507 16.432405793323667 55.47624672129812 16.419372444241702 16 13.097701243055667 17.219497890226616 45.49433049314935 24.188470373568368 17 13.508048093058111 18.708761668920353 50.91762923380199 16.865561004219547 18 13.686442058617487 16.979806454766134 48.56286961763412 20.770881868982258 19 14.206350499340187 19.771386911259185 45.6433994232743 20.378863166126326 20 17.86322314722797 18.0291947019436 51.33551098874245 12.772071162085988 21 17.567121747772113 24.18113911470976 44.45166256659227 13.800076570925857 22 15.055147358303058 15.254516870041218 48.78973135009205 20.900604421563678 23 15.686450204460664 22.973314217754677 45.992041511216826 15.34819406656783 24 16.79611769114221 17.372232449780878 45.037348690963 20.79430116811391 25 13.786432283605677 26.490078363011353 42.95343836040468 16.770050992978284 26 15.081214056466985 16.790619246998258 48.66937651716329 19.458790179371466 27 17.160644173278374 19.9011094638406 44.04823968328962 18.890006679591405 28 14.062780013359182 20.04406901158339 49.55605154689562 16.337099428161807 29 20.655618188038645 15.570168293120021 45.98878317394634 17.785430344895 30 15.098116681057656 21.690751209657712 48.72456460468223 14.486567504602402 31 20.800410550496082 17.108918069109333 41.20656229126276 20.884109089131815 32 20.648286929180042 21.67140483211417 44.00751046740849 13.672797771297308 33 16.59430442645118 18.0220670891644 41.771069223375314 23.612559261009107 34 23.016487186588684 20.359720434662194 38.17203206203874 18.451760316710384 35 18.34810446229289 19.982364249523467 42.53657483586126 19.132956452322382 36 24.150388556719506 20.499217999055084 37.46578745865985 17.884605985565567 37 16.825850018735437 21.299343445039995 45.033479415454295 16.841327120770273 38 21.506247861716165 21.890528013554682 38.32497026767241 18.278253857056743 39 18.94214007591926 21.875661849758067 38.33739267851615 20.84480539580652 40 21.110767175510336 21.31339502451899 40.20645639530148 17.3693814046692 41 17.84245124712859 23.503608608527067 37.44053534481354 21.2134047995308 42 19.87198807448559 22.578240823707663 39.06115084472393 18.48862025708281 43 20.27500366562943 21.901321255763186 36.7792965249833 21.044378553624085 44 20.18458480637331 22.178483569834313 37.09576253237973 20.54116909141265 45 19.00180837718512 21.74593929717665 35.73296296899692 23.519289356641305 46 22.375816620778416 25.210570046105474 34.304996660204296 18.10861667291181 47 15.741638291979603 21.59524119841645 44.378146331926814 18.28497417767713 48 20.305957869699093 23.452900734755055 33.43950082273016 22.801640572815693 49 17.808442351867843 20.720173995210246 40.40012381681628 21.071259836105636 50 18.953136964207165 20.083372704908687 38.29564523223799 22.66784509864616 51 19.15189553770711 19.998452289796518 36.04148677929653 24.80816539319985 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 40.0 1 690.5 2 1341.0 3 15248.0 4 29155.0 5 22309.5 6 15464.0 7 14704.0 8 13944.0 9 13547.5 10 13151.0 11 12441.0 12 11731.0 13 10898.5 14 10066.0 15 9131.5 16 8197.0 17 7621.0 18 7045.0 19 6495.5 20 5946.0 21 5460.0 22 4974.0 23 4799.0 24 4624.0 25 4589.5 26 5063.0 27 5571.0 28 5923.0 29 6275.0 30 6646.0 31 7017.0 32 8212.5 33 9408.0 34 10165.5 35 10923.0 36 11761.5 37 12600.0 38 13074.0 39 13548.0 40 14413.0 41 15278.0 42 16130.5 43 16983.0 44 18731.0 45 20479.0 46 49327.5 47 78176.0 48 55079.5 49 31983.0 50 29606.0 51 27229.0 52 23447.5 53 19666.0 54 18053.0 55 16440.0 56 15696.0 57 14952.0 58 14310.0 59 13668.0 60 13001.0 61 12334.0 62 10952.5 63 9571.0 64 7955.5 65 6340.0 66 5318.0 67 4296.0 68 3573.0 69 2850.0 70 2400.0 71 1950.0 72 1618.5 73 1287.0 74 1143.5 75 747.5 76 495.0 77 371.0 78 247.0 79 198.0 80 149.0 81 106.0 82 63.0 83 39.5 84 16.0 85 16.5 86 17.0 87 10.0 88 3.0 89 1.5 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 491048.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.983803802959095 #Duplication Level Percentage of deduplicated Percentage of total 1 84.11533987853163 33.632512465224295 2 5.271620678746451 4.215588938852402 3 1.8235495298604651 2.1873733988075736 4 1.0978330497796438 1.75582165083174 5 0.866408834988888 1.732116043567303 6 0.7144037441840759 1.7138747486133283 7 0.6387136128818263 1.7876739848622272 8 0.5508267352573568 1.7619318489563718 9 0.49467920811887645 1.7801240762545496 >10 4.305453718883065 29.196093738282077 >50 0.07819154839287928 2.0944779590320217 >100 0.03521208801798517 2.584555986812634 >500 0.002589124118969498 0.6544726006821067 >1k 0.0031069489427633977 3.567196595112944 >5k 0.0 0.0 >10k+ 0.0020712992951755983 11.336185964108415 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GAATGATACCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCG 16727 3.4063879702187974 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGC 13625 2.7746778319023804 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13139 2.67570583731122 No Hit GAATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTC 11261 2.2932585001873544 No Hit GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGTTCGTT 4051 0.8249702676724069 No Hit GCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC 3040 0.619084081393265 No Hit GAATGATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTC 2704 0.5506589987129568 No Hit GAATGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCT 2686 0.5469933692836546 No Hit GAACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCT 2646 0.5388475261074274 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTA 2102 0.4280640589107379 No Hit GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGT 852 0.17350645965363876 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTAT 689 0.14031214871051303 No Hit GAATGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTT 611 0.12442775451687003 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATG 508 0.10345220833808508 No Hit GAATGATACGGCGACCACCCTGTCTCTTATACACATCTGACGCGTGTTCGT 501 0.10202668578224532 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.10426679265570779 0.0 2 0.0 0.0 0.0 0.8294504814193318 0.0 3 0.0 0.0 0.0 0.9298479985663316 0.0 4 0.0 0.0 0.0 1.5943451556670631 0.0 5 0.0 0.0 0.0 4.338679721737997 0.0 6 0.0 0.0 0.0 4.551489874716932 0.0 7 0.0 0.0 0.0 5.235537055440608 0.0 8 0.0 0.0 0.0 5.946465518645835 0.0 9 0.0 0.0 0.0 6.048695850507486 0.0 10 0.0 0.0 0.0 10.123042961176912 0.0 11 0.0 0.0 0.0 10.336464052394064 0.0 12 0.0 0.0 0.0 13.74529577556573 0.0 13 0.0 0.0 0.0 13.959124158941693 0.0 14 0.0 0.0 0.0 14.159308254997475 0.0 15 0.0 0.0 0.0 14.724222479268828 0.0 16 0.0 0.0 0.0 15.014621788501328 0.0 17 0.0 0.0 0.0 15.170818331405483 0.0 18 2.0364607940567928E-4 0.0 0.0 15.294838793763542 0.0 19 2.0364607940567928E-4 0.0 0.0 16.419576090321108 0.0 20 2.0364607940567928E-4 0.0 0.0 16.639310209999838 0.0 21 2.0364607940567928E-4 0.0 0.0 16.773716622407587 0.0 22 2.0364607940567928E-4 0.0 0.0 17.08081491015135 0.0 23 2.0364607940567928E-4 0.0 0.0 17.219701536306022 0.0 24 2.0364607940567928E-4 0.0 0.0 17.357162639904857 0.0 25 2.0364607940567928E-4 0.0 0.0 17.463669539434026 0.0 26 2.0364607940567928E-4 0.0 0.0 17.597668659682963 0.0 27 2.0364607940567928E-4 0.0 0.0 17.80009286261221 0.0 28 2.0364607940567928E-4 0.0 0.0 17.904359655267918 0.0 29 2.0364607940567928E-4 0.0 0.0 18.02064156660856 0.0 30 2.0364607940567928E-4 0.0 0.0 18.156066209413336 0.0 31 2.0364607940567928E-4 0.0 0.0 18.30024763363256 0.0 32 2.0364607940567928E-4 0.0 0.0 18.459091575568987 0.0 33 2.0364607940567928E-4 0.0 0.0 18.585759436959318 0.0 34 2.0364607940567928E-4 0.0 0.0 18.788183639888565 0.0 35 2.0364607940567928E-4 0.0 0.0 18.949064042619053 0.0 36 2.0364607940567928E-4 0.0 0.0 19.090394421726593 0.0 37 2.0364607940567928E-4 0.0 0.0 19.262475358824393 0.0 38 2.0364607940567928E-4 0.0 0.0 19.429668790016454 0.0 39 2.0364607940567928E-4 0.0 0.0 19.59808409768495 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GATAATC 20 7.029334E-4 45.000004 9 GCACGTG 20 7.029334E-4 45.000004 36 CGAGATA 45 3.8380676E-10 45.0 19 CGTTTTT 11370 0.0 43.773087 1 TGATACC 1820 0.0 43.516483 4 GATACCT 1840 0.0 43.165764 5 TACGGCT 1675 0.0 42.313435 7 CGGCTGT 1720 0.0 42.252907 9 ACGGCTG 1685 0.0 42.195843 8 CGATGAA 445 0.0 41.460674 19 CCGATGA 440 0.0 41.420456 18 GGCGACT 305 0.0 41.311478 10 CGACCAC 1410 0.0 41.170216 12 ATGATAC 5800 0.0 41.00431 3 GAATGAT 5925 0.0 40.97468 1 CGCTTTT 330 0.0 40.909092 1 AATGACT 385 0.0 40.90909 2 TGGGCGA 480 0.0 40.781246 6 GCGACCA 1435 0.0 40.76655 11 ATACCTG 1955 0.0 40.741684 6 >>END_MODULE