SRR2933495.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933495.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	322455
Sequences flagged as poor quality	0
Sequence length	51
%GC	37

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19756	6.126746367710223	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCG	8957	2.7777519343784403	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGC	6481	2.009892853266347	No Hit
GAATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTC	3894	1.2076103642368703	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGTGTTCGTT	2485	0.7706501682405297	No Hit
GCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	2266	0.7027337147819075	No Hit
GAACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCT	1293	0.40098618411871423	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTC	1055	0.3271774356111706	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCT	943	0.2924439069017382	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTA	776	0.24065373462963824	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCGTGTTCGTTCGTATGCCG	693	0.2149137088896125	No Hit
CTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGCT	640	0.19847730691104185	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCTTCTGC	446	0.13831387325363229	No Hit
GAATGACTCTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCGTCT	367	0.11381433068180055	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGT	354	0.10978276038517001	No Hit
GAATGCTACCTGTCTCTTATACACATCTGACGCGTGTTCGTTCGTATGCCG	337	0.10451070692034548	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA	326	0.10109937820781195	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGGTG	95	0.0	45.000004	17
CCGATGA	125	0.0	45.000004	18
GCGGGTA	30	2.1606265E-6	45.000004	5
CGGTGTA	30	2.1606265E-6	45.000004	19
TTTAGCG	25	3.8845435E-5	45.0	1
AGACTCC	20	7.0257304E-4	45.0	36
TGCTTCG	20	7.0257304E-4	45.0	1
GGATAGG	20	7.0257304E-4	45.0	8
TCGGACT	20	7.0257304E-4	45.0	15
CTACGGC	85	0.0	45.0	6
ACGGATC	25	3.8845435E-5	45.0	30
GCTAGTG	25	3.8845435E-5	45.0	12
TTAGTTG	25	3.8845435E-5	45.0	1
TTCGGAC	20	7.0257304E-4	45.0	14
CCGGTGT	90	0.0	45.0	18
GAACATA	20	7.0257304E-4	45.0	9
CACCGGT	100	0.0	45.0	16
TACGGCT	915	0.0	44.508198	7
CGTTTTT	8665	0.0	44.428734	1
TGATACC	1205	0.0	43.87967	4