##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933490.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 739550 Sequences flagged as poor quality 0 Sequence length 51 %GC 34 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 29.39391521871408 31.0 28.0 33.0 25.0 34.0 2 28.515222770603746 31.0 27.0 33.0 16.0 34.0 3 28.46528835102427 31.0 26.0 33.0 16.0 34.0 4 33.18897167196268 35.0 32.0 37.0 28.0 37.0 5 34.33920627408559 35.0 33.0 37.0 32.0 37.0 6 33.64267054289771 35.0 33.0 37.0 28.0 37.0 7 33.9453681292678 35.0 33.0 37.0 30.0 37.0 8 33.61238185383003 35.0 33.0 37.0 28.0 37.0 9 34.968909471976204 37.0 34.0 39.0 28.0 39.0 10 35.04293962544791 37.0 34.0 39.0 28.0 39.0 11 35.226965046311946 37.0 34.0 39.0 28.0 39.0 12 35.20575214657562 37.0 34.0 39.0 27.0 39.0 13 35.15551484010547 37.0 34.0 39.0 27.0 39.0 14 35.90018930430667 38.0 34.0 40.0 27.0 41.0 15 36.26535325535799 38.0 34.0 41.0 27.0 41.0 16 36.29163545399229 38.0 34.0 41.0 29.0 41.0 17 35.546160503008586 38.0 33.0 40.0 27.0 41.0 18 35.35861266986681 38.0 33.0 39.0 27.0 40.0 19 34.607934554796834 37.0 33.0 37.0 27.0 40.0 20 33.60512068149551 35.0 32.0 37.0 27.0 39.0 21 33.9326414711649 35.0 33.0 37.0 27.0 40.0 22 34.415510783584615 35.0 33.0 38.0 28.0 40.0 23 34.772875397201 35.0 33.0 38.0 30.0 40.0 24 34.2104955716314 35.0 33.0 38.0 27.0 40.0 25 33.219878304374284 35.0 32.0 38.0 23.0 40.0 26 33.14713001149347 35.0 32.0 38.0 23.0 40.0 27 34.01842336556014 35.0 33.0 38.0 26.0 40.0 28 33.621114191062134 35.0 33.0 38.0 24.0 40.0 29 33.49147454533162 35.0 33.0 38.0 23.0 40.0 30 32.78663782029613 35.0 32.0 38.0 21.0 40.0 31 32.63565005746738 35.0 32.0 38.0 21.0 40.0 32 31.876829152863227 35.0 31.0 38.0 16.0 40.0 33 30.986981272395376 35.0 29.0 38.0 11.0 40.0 34 30.34432154688662 35.0 25.0 39.0 8.0 40.0 35 29.73309985802177 35.0 22.0 39.0 7.0 40.0 36 29.094886079372593 35.0 20.0 39.0 7.0 40.0 37 28.854625109864106 35.0 18.0 39.0 7.0 40.0 38 28.547212494084242 35.0 18.0 38.0 7.0 40.0 39 28.144540599012913 34.0 18.0 38.0 7.0 40.0 40 27.848340206882565 34.0 16.0 38.0 7.0 40.0 41 27.46649584206612 33.0 15.0 38.0 7.0 40.0 42 27.5901980934352 34.0 15.0 38.0 7.0 40.0 43 27.49492123588669 34.0 15.0 38.0 7.0 40.0 44 27.514316814278953 34.0 15.0 38.0 7.0 40.0 45 27.65911973497397 34.0 15.0 39.0 7.0 40.0 46 27.445358664052463 34.0 15.0 38.0 7.0 40.0 47 27.400511121628018 34.0 15.0 38.0 7.0 40.0 48 27.262895003718477 34.0 15.0 38.0 7.0 40.0 49 27.459148130619973 34.0 15.0 38.0 7.0 40.0 50 27.437280778852006 34.0 15.0 38.0 7.0 40.0 51 26.387042120208235 32.0 12.0 37.0 7.0 40.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 13.0 9 30.0 10 39.0 11 33.0 12 73.0 13 91.0 14 130.0 15 230.0 16 460.0 17 845.0 18 1722.0 19 3096.0 20 5149.0 21 7781.0 22 11594.0 23 16912.0 24 24781.0 25 36133.0 26 44261.0 27 44619.0 28 40343.0 29 36595.0 30 36261.0 31 38987.0 32 44041.0 33 50007.0 34 54918.0 35 63779.0 36 64693.0 37 61593.0 38 43957.0 39 6384.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 26.282198634304642 2.1376512744236362 26.760056791292 44.82009329997972 2 43.74254614292475 17.183422351429922 28.049624771820703 11.024406733824623 3 9.951186532350755 17.32080319112974 61.04523020755865 11.682780068960854 4 9.144885403285782 2.382394699479413 75.38651882901765 13.086201068217159 5 20.626326820363737 2.686633763775269 61.96376174700832 14.72327766885268 6 11.375025353255358 14.849165032790209 64.64079507808803 9.135014535866405 7 43.38989926306538 0.9743763099181935 53.0168345615577 2.618889865458725 8 41.98634304644717 11.355959705226152 43.031302819282 3.6263944290446894 9 39.59313095801501 2.402542086403894 42.29017645865729 15.714150496923804 10 25.647082685416805 15.841390034480426 47.3961192617132 11.11540801838956 11 22.94516935974579 12.611858562639444 52.91515110540194 11.527820972212833 12 18.53992292610371 10.891488067067812 54.59928334798189 15.969305658846597 13 17.009532824014602 12.33128253667771 61.34000405652086 9.31918058278683 14 13.217902778716786 18.133729970928268 54.88662024203907 13.761747008315867 15 9.438983165438444 13.185180177134745 64.70137245622338 12.674464201203433 16 13.092691501588805 15.019809343519707 52.313704279629505 19.57379487526198 17 13.561084443242514 15.1859914813062 57.44236359948618 13.810560475965113 18 13.399634913122846 14.164289094719763 56.93665066594551 15.499425326211885 19 12.79345547968359 16.91920762625921 53.350415793387874 16.936921100669323 20 12.710026367385572 18.067203028868907 58.97072544114664 10.252045162598877 21 13.270367115137581 20.836995470218376 55.29849232641472 10.594145088229329 22 10.73990940436752 12.678385504698802 58.914475018592384 17.66723007234129 23 11.536204448651207 19.692380501656412 56.8387532959232 11.932661753769185 24 13.771212223649517 16.4289094719762 52.61050638902035 17.18937191535393 25 11.795010479345548 23.488337502535327 50.74950983706308 13.967142181056047 26 11.363126225407342 14.617132039753905 55.19721452234467 18.822527212494084 27 13.365019268474072 16.45176120613887 53.018457169900614 17.16476235548644 28 9.148265837333513 17.267797985261307 56.33953079575418 17.244405381651003 29 14.596984652829423 18.37184774525049 50.72517071191941 16.305996890000678 30 12.358596443783382 19.571631397471435 52.44811033736732 15.621661821377867 31 14.687174633222904 15.984855655466163 49.46940707186803 19.858562639442905 32 16.8417280778852 23.220201473869245 46.51098641065513 13.427084037590426 33 14.040700425934691 19.17098235413427 43.920762625921164 22.86755459400987 34 15.266445811642216 22.708268541680752 44.29301602325739 17.732269623419647 35 12.43080251504293 22.83091068893246 42.80102765195051 21.9372591440741 36 15.81340004056521 23.360421878169156 37.45980663917247 23.366371442093165 37 14.634169427354474 25.5929957406531 40.48177946048273 19.291055371509703 38 17.649246163207355 24.29964167399094 37.01047934554797 21.040632817253734 39 17.664390507741192 23.927388276654725 36.85173416266649 21.556487052937598 40 17.41518490974241 23.138394969914135 42.158474748157666 17.28794537218579 41 16.892164153877356 22.169562571834224 35.613548779663304 25.324724494625112 42 15.718071800419173 21.202082347373402 45.00615238996687 18.073693462240552 43 17.744980055439118 21.384896220674733 37.33838144817795 23.5317422757082 44 20.02028260428639 21.13406801433304 36.848353728618754 21.997295652761814 45 15.89845176120614 20.129132580623352 37.85301872760463 26.119396930565884 46 19.820296126022583 23.361909269150157 35.90697045500642 20.910824149820836 47 13.706848759380705 20.775336353187747 45.49712663105942 20.020688256372118 48 17.157325400581435 23.821918734365493 35.594077479548375 23.426678385504697 49 15.89277263200595 19.99067000202826 42.599689000067606 21.51686836589818 50 16.450409032519776 19.636265296464067 38.959231965384355 24.954093705631802 51 15.87803393955784 20.83118112365628 37.0138597795957 26.276925157190185 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 81.0 1 1371.0 2 2661.0 3 34216.0 4 65771.0 5 47165.5 6 28560.0 7 26695.0 8 24830.0 9 24335.5 10 23841.0 11 22888.0 12 21935.0 13 20461.0 14 18987.0 15 17615.5 16 16244.0 17 15009.0 18 13774.0 19 12922.5 20 12071.0 21 11328.5 22 10586.0 23 10423.0 24 10260.0 25 10253.5 26 10546.0 27 10845.0 28 11348.0 29 11851.0 30 12255.5 31 12660.0 32 12843.0 33 13026.0 34 13776.0 35 14526.0 36 14586.5 37 14647.0 38 14931.0 39 15215.0 40 16343.0 41 17471.0 42 20668.0 43 23865.0 44 25738.5 45 27612.0 46 67581.5 47 107551.0 48 76443.5 49 45336.0 50 40683.5 51 36031.0 52 30952.0 53 25873.0 54 25261.5 55 24650.0 56 23342.5 57 22035.0 58 19983.0 59 17931.0 60 15258.5 61 12586.0 62 10824.5 63 9063.0 64 7474.0 65 5885.0 66 4947.5 67 4010.0 68 3238.5 69 2467.0 70 2100.5 71 1734.0 72 1443.5 73 1153.0 74 973.0 75 611.0 76 429.0 77 331.0 78 233.0 79 180.5 80 128.0 81 92.0 82 56.0 83 41.0 84 26.0 85 16.5 86 7.0 87 6.0 88 5.0 89 2.5 90 0.0 91 0.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 739550.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 46.01965397695623 #Duplication Level Percentage of deduplicated Percentage of total 1 85.89774839348311 39.5298465846774 2 5.797374012058882 5.335862920198965 3 2.0396393172354004 2.8159048685090515 4 1.154193365088549 2.124623171354949 5 0.7954796031261461 1.8303848040795854 6 0.6133885014726859 1.6936755954730025 7 0.5054380570525197 1.628205914463941 8 0.42656279483944065 1.5704217774363542 9 0.3812135836004443 1.578898548774713 >10 2.251255395859231 17.063992185039307 >50 0.07467840667958925 2.46615751693828 >100 0.05466458871680022 4.5861728827563155 >500 0.004480703993180185 1.4061495838892568 >1k 0.002688422395908111 3.7942256980083466 >5k 0.0 0.0 >10k+ 0.0011948543981813826 12.575477948400549 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 36346 4.914610235954296 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCG 20777 2.809411128388885 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGC 17376 2.349536880535461 No Hit GAATCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTC 16981 2.2961260225812996 TruSeq Adapter, Index 13 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCACCAACTCT 4353 0.5886011763910486 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCACCAACTCTCGTA 4137 0.5593942262186464 No Hit GAATGATCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTC 4116 0.5565546616185518 No Hit GAACTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCT 4057 0.548576837265905 TruSeq Adapter, Index 13 (100% over 22bp) GAATGACTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCT 3655 0.4942194577783787 No Hit GCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTTCTGC 3605 0.4874585896829152 TruSeq Adapter, Index 13 (96% over 25bp) GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCACCAACTCTCGT 1582 0.21391386654046382 No Hit CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1065 0.14400649043337163 No Hit GAATGATACGGCGCTGTCTCTTATACACATCTGACGCACCAACTCTCGTAT 1031 0.1394091001284565 No Hit GAATGATACGGCCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATG 971 0.13129605841390035 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 893 0.12074910418497733 No Hit GAATGCTGTCTCTTATACACATCTGACGCACCAACTCTCGTATGCCGTCTT 890 0.12034345209924954 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA 851 0.11506997498478805 No Hit CGCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 781 0.1056047596511392 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.13994996957609357 0.0 2 0.0 0.0 0.0 0.9302954499357717 0.0 3 0.0 0.0 0.0 1.0952606314650801 0.0 4 0.0 0.0 0.0 1.9556487052937597 0.0 5 0.0 0.0 0.0 5.124467581637482 0.0 6 0.0 0.0 0.0 5.424244472990332 0.0 7 0.0 0.0 0.0 6.18132648232033 0.0 8 0.0 0.0 0.0 7.076330200797782 0.0 9 0.0 0.0 0.0 7.232641471164897 0.0 10 0.0 0.0 0.0 10.995875870461767 0.0 11 0.0 0.0 0.0 11.462781421134475 0.0 12 0.0 0.0 0.0 14.732066797376783 0.0 13 0.0 0.0 0.0 15.040091947806099 0.0 14 0.0 0.0 0.0 15.277263200594957 0.0 15 0.0 0.0 0.0 16.07017781083091 0.0 16 0.0 0.0 0.0 16.478128591711176 0.0 17 0.0 0.0 0.0 16.73490636197688 0.0 18 0.0 0.0 0.0 16.94733283753634 0.0 19 0.0 0.0 0.0 17.88168480832939 0.0 20 0.0 0.0 0.0 18.1940369143398 0.0 21 0.0 0.0 0.0 18.45730511797715 0.0 22 0.0 0.0 0.0 18.88283415590562 0.0 23 0.0 0.0 0.0 19.140288012980868 0.0 24 0.0 0.0 0.0 19.346224055168683 0.0 25 0.0 0.0 0.0 19.53728618754648 0.0 26 0.0 0.0 0.0 19.746873098505848 0.0 27 0.0 0.0 0.0 19.99972956527618 0.0 28 0.0 0.0 0.0 20.18916908931107 0.0 29 0.0 0.0 0.0 20.435940774795483 0.0 30 0.0 0.0 0.0 20.712730714623756 0.0 31 1.3521736190926916E-4 0.0 0.0 20.904874585896827 0.0 32 1.3521736190926916E-4 0.0 0.0 21.12149279967548 0.0 33 1.3521736190926916E-4 0.0 0.0 21.353390575349874 0.0 34 1.3521736190926916E-4 0.0 0.0 21.645595294435804 0.0 35 1.3521736190926916E-4 0.0 0.0 21.95321479277939 0.0 36 1.3521736190926916E-4 0.0 0.0 22.19606517476844 0.0 37 1.3521736190926916E-4 0.0 0.0 22.461226421472517 0.0 38 1.3521736190926916E-4 0.0 0.0 22.785883307416672 0.0 39 1.3521736190926916E-4 0.0 0.0 23.426948820228517 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGAACGC 20 7.0316525E-4 45.000004 25 TCGTTCA 75 0.0 45.0 16 CACCACG 25 3.889452E-5 45.0 25 CGTTTTT 24595 0.0 44.533443 1 ACGGCTG 2285 0.0 42.538292 8 TACGGCT 2280 0.0 42.43421 7 TGATACC 2490 0.0 42.379517 4 GATACCT 2490 0.0 42.289158 5 ACCGGTG 60 3.6379788E-12 41.250004 17 CGATGAA 415 0.0 41.20482 19 CACCGGT 115 0.0 41.086956 16 GAATGAT 7920 0.0 40.965908 1 CGGCTGT 2370 0.0 40.822784 9 ATGATAC 7735 0.0 40.811245 3 ATACGGC 5140 0.0 40.710117 6 AATGATA 7600 0.0 40.61842 2 GAATCTG 2150 0.0 40.5 1 GATACGG 5235 0.0 40.358166 5 ATACCTG 2620 0.0 40.27672 6 TGATACG 5300 0.0 40.20283 4 >>END_MODULE