SRR2933482.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933482.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	703970
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18980	2.696137619500831	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCG	17999	2.556785090273733	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTC	16712	2.373964799636348	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGC	14336	2.0364504169211757	No Hit
GAACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT	3776	0.536386493742631	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTC	3382	0.4804181996391892	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCAGAGTTT	3275	0.4652186882963763	No Hit
GCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC	2912	0.4136539909371138	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCT	2832	0.40228987030697333	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTA	2671	0.37941957753881556	No Hit
GAATGCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTT	1376	0.1954628748384164	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGT	1059	0.15043254684148472	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACCGAAT	20	7.0314226E-4	45.0	17
CGATGAA	655	0.0	44.312977	19
CGTTTTT	15555	0.0	44.175507	1
CCGATGA	665	0.0	42.63158	18
GATACCT	2195	0.0	42.23235	5
TGATACC	2220	0.0	41.85811	4
ATACCTG	2240	0.0	41.58482	6
TACGGCT	1825	0.0	40.931503	7
CGGCTGT	1820	0.0	40.796703	9
CGACCAC	1695	0.0	40.75221	12
ACGGCTG	1840	0.0	40.597824	8
TGGGACG	140	0.0	40.17857	6
GCGACCA	1745	0.0	40.100285	11
GAATCTG	2100	0.0	40.071426	1
TACCTGT	2345	0.0	39.626865	7
CCGGTGA	80	0.0	39.375	18
ATGATAC	6950	0.0	39.269783	3
AATCTGT	2150	0.0	39.139534	2
CACCGGT	190	0.0	39.078945	16
ACCACCG	1095	0.0	39.041096	14