SRR2933481.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933481.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	514923
Sequences flagged as poor quality	0
Sequence length	51
%GC	38

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	29896	5.805916612775114	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCG	7894	1.5330447464960781	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGC	5389	1.0465642435859341	No Hit
GAATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTC	4893	0.9502391619717899	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCAGAGTTT	1543	0.2996564534891625	No Hit
GAACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCT	1527	0.29654919279193204	No Hit
GCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCTTCTGC	1306	0.25363015441143627	TruSeq Adapter, Index 14 (95% over 21bp)
GAATGATCTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTC	1081	0.20993430085663295	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTA	832	0.1615775562559839	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCCAGAGTTTCGTATGCCGTCT	685	0.13302959860017907	No Hit
GAATGATACCTGTCTCTTCTACACATCTGACGCCCAGAGTTTCGTATGCCG	665	0.129145522728641	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTATGG	30	2.1631586E-6	45.000004	2
GACACGA	80	0.0	45.000004	25
GGCAACG	30	2.1631586E-6	45.000004	8
CACGCGA	30	2.1631586E-6	45.000004	15
CCGAGAA	20	7.0296536E-4	45.000004	21
CGTTTTT	13550	0.0	44.41882	1
AACACGT	75	0.0	42.0	41
TGATACC	1155	0.0	41.688313	4
GAATGAT	3135	0.0	41.483253	1
AATGATA	3030	0.0	41.435646	2
CGACCAC	670	0.0	41.30597	12
TACGGCT	790	0.0	41.297466	7
ATGATAC	3095	0.0	40.856216	3
GATACCT	1175	0.0	40.78723	5
CGGCGAC	1125	0.0	40.6	9
CGTTCAT	50	1.0786607E-9	40.500004	17
ATACGGC	1940	0.0	40.476807	6
GCGACCA	690	0.0	40.43478	11
ACGGCGA	1130	0.0	40.22124	8
ATACCTG	1175	0.0	40.212765	6