SRR2933480.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933480.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	403944
Sequences flagged as poor quality	0
Sequence length	51
%GC	39

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCG	16736	4.143148555245282	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGC	12806	3.1702414196027173	No Hit
GAATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTC	11966	2.962291802824154	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	11303	2.7981601410096446	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTC	2847	0.7048006654387736	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCGATATCGCT	2747	0.6800447586794209	No Hit
GAATGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCT	2632	0.6515754659061652	No Hit
GCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC	2545	0.6300378270255284	Illumina Single End Adapter 1 (95% over 21bp)
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCGATATCGCTCGTA	2484	0.6149367239023231	No Hit
GAACTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCT	2404	0.5951319984948409	No Hit
GAATGATACGGCGACCTGTCTCTTATACACATCTGACGCGATATCGCTCGT	882	0.21834709761749155	No Hit
GAATGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTT	781	0.1933436317905452	No Hit
GAATGATACGGCGCTGTCTCTTATACACATCTGACGCGATATCGCTCGTAT	640	0.1584378032598578	No Hit
GAATGATACGGCCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATG	526	0.13021606955419565	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AGCGTCA	20	7.027847E-4	45.000004	35
CCATCGA	20	7.027847E-4	45.000004	15
CACAATT	20	7.027847E-4	45.000004	42
TCAAGCG	20	7.027847E-4	45.000004	17
CGTTTTT	9300	0.0	44.201614	1
CCGATGA	300	0.0	43.500004	18
GATACCT	1920	0.0	43.007816	5
CGATGAA	315	0.0	42.857143	19
TACGGCT	1590	0.0	42.73585	7
ACGGCTG	1595	0.0	42.460815	8
TGATACC	1945	0.0	42.455013	4
GCGACTG	315	0.0	42.142857	11
CGGCTGT	1600	0.0	41.90625	9
ATACCTG	2005	0.0	41.745636	6
TACGGGA	65	0.0	41.538464	4
CACCGGT	60	3.6379788E-12	41.250004	16
ATGATAC	5505	0.0	41.19891	3
ATACGGC	3575	0.0	41.16084	6
AATGATA	5390	0.0	41.159554	2
GAATGAT	5705	0.0	41.13497	1